Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1450
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RCV3 Cluster: CCAAT-box DNA binding protein subunit B...    35   2.6  
UniRef50_Q8IM30 Cluster: Putative uncharacterized protein; n=5; ...    34   4.6  

>UniRef50_Q7RCV3 Cluster: CCAAT-box DNA binding protein subunit B;
           n=3; Plasmodium (Vinckeia)|Rep: CCAAT-box DNA binding
           protein subunit B - Plasmodium yoelii yoelii
          Length = 859

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 25/69 (36%), Positives = 33/69 (47%)
 Frame = +3

Query: 114 NPCKEPVQENDP*MNTVHMKYLSVCVCLFNIDSI*ERNHIKKREKKTPCRIFRHRKTSRQ 293
           NPC     E +      H KY ++       DS  E N+I K EKKT  +I + +  S  
Sbjct: 13  NPCVSKSNEKE-----FHFKYANLLEIDSGHDSTKEMNNIGKNEKKT--KIVKKKFISEN 65

Query: 294 EKLCTLENL 320
           EKL  L+NL
Sbjct: 66  EKLHILQNL 74


>UniRef50_Q8IM30 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 608

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 172 NTYQCVCVFLTSIQFKNVITLKKEKKKHLAEFFVTEKHRDK 294
           ++Y+   VF     FKNVI +KKE+KK+L   F     R+K
Sbjct: 22  DSYKKQNVFFLKAFFKNVINIKKERKKNLVNSFFYVGRRNK 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,379,015
Number of Sequences: 1657284
Number of extensions: 11760572
Number of successful extensions: 23750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23744
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)