Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1450
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   5.2  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   6.9  

>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -3

Query: 681 LS*TRRYAIHVQRLHSESLTVPIALSYESSISLINAIPIQYCAYP*TAYTIKITNELRSE 502
           +S T    I+VQR     L +   +   +SI   NAI +    Y  TA   + T    SE
Sbjct: 563 ISLTSHQFIYVQRKRHRPLILSEFVG-SASILNDNAIIVNPWDYSKTAEAFR-TALTMSE 620

Query: 501 RPCLNRD-ALCQSLRRNQTLSVYCAFKTLLR 412
             C  R+ A+C  + R+   S    F++L++
Sbjct: 621 EECQKRNKAMCNLILRHDAASWAVTFQSLIK 651


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 577 CNTDTILCISINSLHYKDYKRT 512
           C T  I+C+S +S+HY++   T
Sbjct: 359 CRTVMIVCVSPSSVHYEETHNT 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,990
Number of Sequences: 5004
Number of extensions: 56336
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)