Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1450
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400...    28   7.2  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           28   9.5  

>11_01_0515 +
           4003167-4003229,4003318-4003738,4004224-4004367,
           4004474-4004556,4004661-4004775,4005309-4005400,
           4005558-4005612,4005689-4005834,4005888-4006001,
           4006149-4006342,4006985-4007112,4008526-4008583,
           4009800-4009876,4010214-4010263,4010336-4010515,
           4010633-4010731,4010816-4011133,4011221-4011281,
           4011693-4012781,4012951-4013005,4013133-4013291,
           4013923-4014442
          Length = 1406

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 225 NHIKKREKKTPCRIFRHRKTSRQEKLCTLENLIGD 329
           +H +K  K +   IF H +   +E LC+L N+ G+
Sbjct: 516 DHFRKNPKDSRVIIFAHYRECVKEILCSLRNIDGE 550


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 333 NDLQLNSRACKASL---VAMFFGD-EKFGKVXXXXXX*CDYVLKLNRC*KDT 190
           +DL ++S A +  L   VA   G  E+ G V       C+++L LN C  DT
Sbjct: 312 SDLTIDSAAIETKLSKCVAKVLGGCEEHGHVNYDASPPCEHILSLNMCLLDT 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,878
Number of Sequences: 37544
Number of extensions: 301583
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)