Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1450
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51160.1 68418.m06343 ankyrin repeat family protein contains ...    31   0.85 
At4g19990.1 68417.m02927 far-red impaired responsive family prot...    30   1.5  
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    28   7.9  

>At5g51160.1 68418.m06343 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 442

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 229 TLKKEKKKHLAEFFVTEKHRDKRSFARS 312
           T+K +  K L ++F  +KHRD  S ARS
Sbjct: 245 TMKSQSHKELVKYFTFKKHRDSPSEARS 272


>At4g19990.1 68417.m02927 far-red impaired responsive family protein
           / FAR1 family protein similar to far-red impaired
           response protein [Arabidopsis thaliana] GI:5764395;
           contains Pfam profile PF03101: FAR1 family
          Length = 672

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 198 FNIDSI*ERNHIKKREKKTPCRIFRHRKTSRQEKLCTLENLIGDH 332
           FNI    +R  I +   KT C+ F H K  RQ+    + +L+ +H
Sbjct: 88  FNIPQARKRGRINRSSSKTDCKAFLHVK-RRQDGRWVVRSLVKEH 131


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 648 QRLHSESLTVPIALSYESSISLINA 574
           +R HSE LT+P  LS++S + ++ A
Sbjct: 74  RRAHSEILTLPDDLSFDSDLGVVGA 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,229
Number of Sequences: 28952
Number of extensions: 268252
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)