Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1449
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 199 4e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 2e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 4e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 2e-04
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 33 0.059
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.42
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.42
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.55
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 3.0
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 27 3.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 26 6.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 199 bits (485), Expect = 4e-52
Identities = 104/169 (61%), Positives = 109/169 (64%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
LTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+F
Sbjct: 65 LTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVXX 615
ETFN PA YVAIQAVLSLYASGRTT P + P
Sbjct: 125 ETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRD 184
Query: 616 XXXXXXXXXXXXXXXXXXXXEREIVRDIKEKLCYVALDFQQEMATRLHS 762
EREIVRDIKEKLCYVALDF+QE+ T S
Sbjct: 185 LTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQS 233
Score = 129 bits (311), Expect = 5e-31
Identities = 57/62 (91%), Positives = 61/62 (98%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 247
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 248 RG 253
RG
Sbjct: 62 RG 63
Score = 109 bits (261), Expect = 6e-25
Identities = 49/54 (90%), Positives = 53/54 (98%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 671
GIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TT
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTT 203
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (257), Expect = 2e-24
Identities = 67/169 (39%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIM 432
L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ +
Sbjct: 69 LKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYF 128
Query: 433 FETFNTPAMYVAIQAVLSLYASGRTT---VSCWTPATVSPTPCPSTKDTHSPTPSCVWT* 603
+ET N PA+ ++Q VL+LYAS RTT + C T S P D S PS +
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS-VP---IYDGFS-IPSAIQQE 183
Query: 604 PV--XXXXXXXXXXXXXXXXXXXXXXEREIVRDIKEKLCYVALDFQQEM 744
+ E+EIVR+IKEK CYVA DF+ E+
Sbjct: 184 EIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Score = 63.3 bits (147), Expect = 4e-11
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = +3
Query: 471 PSRALAVRVRSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 650
P AL R+ GIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L +
Sbjct: 143 PVLALYASARTT-GIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKS 201
Query: 651 GYSFTTT 671
G+ ++
Sbjct: 202 GHELVSS 208
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +1
Query: 259 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 438
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 439 TFNTPAMYVAIQAVLSLYAS 498
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +3
Query: 498 RSYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 650
RS G V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 235
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (240), Expect = 2e-22
Identities = 42/82 (51%), Positives = 62/82 (75%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MF
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 436 ETFNTPAMYVAIQAVLSLYASG 501
E + +YVAIQAVLSLYA G
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQG 146
Score = 72.1 bits (169), Expect = 8e-14
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +3
Query: 510 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 671
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F T
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRT 203
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 247
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 248 R 250
R
Sbjct: 62 R 62
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 682 EIVRDIKEKLCYVALDFQ 735
E VR++KEKLCYV+ D +
Sbjct: 207 ETVREMKEKLCYVSYDLE 224
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/85 (38%), Positives = 48/85 (56%)
Frame = +1
Query: 256 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 435
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 436 ETFNTPAMYVAIQAVLSLYASGRTT 510
E+ PA Y+A Q + +ASG+ T
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGT 147
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 172
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 3e-11
Identities = 28/82 (34%), Positives = 48/82 (58%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 450
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 451 PAMYVAIQAVLSLYASGRTTVS 516
P++ I + S Y + + + S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 181
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.1 bits (77), Expect = 0.011
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 501 SYHGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 662
S GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.4 bits (130), Expect = 4e-09
Identities = 23/77 (29%), Positives = 45/77 (58%)
Frame = +1
Query: 280 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 459
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 460 YVAIQAVLSLYASGRTT 510
Y+ QAV +A+ ++T
Sbjct: 134 YLTKQAVCVAFANSKST 150
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 241
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 271 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 438
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 439 TFNTPAMYVAIQAVLSLYASG 501
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 507 HGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 647
HG+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 195 HGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 513 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 659
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 676 EREIVRDIKEKLCYVALDFQQEM 744
E IV +IKE +CYV+ +F+++M
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDM 233
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 32.7 bits (71), Expect = 0.059
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 611 RPHRLPHEDPHRARLLVHYHPPSGKSFVTSRRSCATSLLTSSRKW 745
RP + P DPH + L Y S K S+ SCA +L RK+
Sbjct: 263 RPQKPPQIDPHSSSLADEYR-ESNKRLQESKESCARFILDCDRKY 306
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 331 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 474
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 131 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 253
G+ PRA F ++ P H G+++ M KD G+E S +G
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKG 540
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 228 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 67
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 29.5 bits (63), Expect = 0.55
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 269 YLRVRYLFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 150
Y + L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = -2
Query: 262 GSGTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 89
G G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 516 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 662
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 578 PRHPASGLSRSRPHRLPHEDPHRARLLVHYHPPSGKSF 691
P++P + L++ PH LPH + +HP G F
Sbjct: 150 PKNPHAFLAQDLPHGLPHRRAALPCEALGFHPNVGDYF 187
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 231 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 115
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 373 LLTEAPLNPKANREKMTQIMFETFN 447
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 409 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTVSCWTPATVSPTPCPSTKDTHSPTP 585
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAP 182
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 505 TTVSCWTPATVSPTPCPSTKDT 570
TT S TPA V P P PST T
Sbjct: 838 TTSSHITPADVHPLPPPSTSTT 859
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/64 (31%), Positives = 23/64 (35%)
Frame = +2
Query: 449 RPPCTSPSKPCSRCTRPVVPRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLP 628
+PP S S+ S P P G LP + R TPP L S P LP
Sbjct: 375 QPPPLSSSRAVSN--PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 629 HEDP 640
P
Sbjct: 433 PSAP 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,415
Number of Sequences: 5004
Number of extensions: 75754
Number of successful extensions: 273
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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