Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1448
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.37 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.86 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   3.5  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.5  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   6.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 228 NYVDGGYSSATASTSVDIPTSPRPSPSSKASLYLTPSTDPFH-TQLRSTCLIPSR*PCPN 404
           NY+      +T STS     S   + S+ +S++   S D F   Q RS C   S  P  +
Sbjct: 187 NYIKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASIDSFTLEQHRSWC--SSSQPVLS 244

Query: 405 PTRSSNTCH 431
            T S+  C+
Sbjct: 245 TTNSTTNCY 253


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 530 LTPSRCSCPSPTQSRSTFPTPSRFQCPN 613
           +TP+  + P+P +  +  PTP     P+
Sbjct: 37  MTPNSAASPAPPEEEAASPTPGDVPTPS 64


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +2

Query: 536 PSRCSCPSPTQSRSTFPTPSRFQCPNLTPWRN 631
           P  C   S      T    +  +CPN  PW N
Sbjct: 495 PHSCKLTSKEVPGETINLQTCVRCPNNYPWVN 526


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 249 SSATASTSVDI-PTSPRPSPSSKASLYLTPSTD 344
           SS   +  V + PT+P P+PS      LTPS D
Sbjct: 83  SSPILAEKVSVSPTTP-PTPSPPPEERLTPSKD 114



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 276 DIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR 389
           +IP+  R SP     + ++P+T P  +      L PS+
Sbjct: 76  EIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSK 113


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 344 PVPYPVEKHVPYPVKVAVPQP 406
           PVP PVE+    P     P P
Sbjct: 392 PVPQPVEEVTQKPSSTKAPAP 412


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 138 RGLLNLGYGYGIDGLDVGYIGHGQGLGGA 224
           +  LNL   +G DG D+ +   GQ  G A
Sbjct: 127 KSALNLVQKWGFDGFDLDWEYPGQRGGAA 155


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = +3

Query: 603 SAPTLPRGETRAIPRRKLKCPYRSPTPL*NTSVSPSRCPSTGPYP 737
           S P  P+     I    +  P  +P P   +S SP+   S    P
Sbjct: 10  SPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAP 54


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 144 LLNLGYGYGIDGLDVGYIGHG 206
           LL LGY   +   D  Y+ HG
Sbjct: 472 LLELGYRIIVSTKDAWYLDHG 492


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 399 PNPTRSSNTCH 431
           PNP ++  TCH
Sbjct: 228 PNPCQNGGTCH 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,697
Number of Sequences: 336
Number of extensions: 3434
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)