Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1448
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 32 0.076
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 32 0.10
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.18
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.71
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.94
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 2.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.2
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 2.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 3.8
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 3.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.8
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 5.0
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.6
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 26 6.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 8.8
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 8.8
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 32.3 bits (70), Expect = 0.076
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 4/150 (2%)
Frame = +3
Query: 249 SSATASTSVDIPTSPRPSP--SSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSSN 422
+SAT+S+S P+ P P+P SS +S L+ T +++T SR P P + S
Sbjct: 242 TSATSSSSRLYPSRPAPTPPASSSSSPLLSSQT------VKTTTSNASRQPSPLVSSKST 295
Query: 423 TCHIT*RS-TLRFPSTFPRHTQSKRRCLIPTRTS*QALPRQGARAPALPSR-EARSLPRQ 596
I S L P T R T +A +A A P + EA S PR
Sbjct: 296 DNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAPSAPRL 355
Query: 597 GSSAPTLPRGETRAIPRRKLKCPYRSPTPL 686
AP ++ + + + C ++PT L
Sbjct: 356 QKRAPRQQSNDSAVLAKLQSICNPKNPTLL 385
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 258 TASTSVDIPTSPRPSPSSKASLYLTPSTDP 347
+A TSV TSP+PSPS S+ TP +P
Sbjct: 460 SAPTSVLTGTSPQPSPSLSTSIMSTPKLNP 489
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.1 bits (67), Expect = 0.18
Identities = 52/198 (26%), Positives = 72/198 (36%), Gaps = 7/198 (3%)
Frame = +3
Query: 162 GYGIDGLDVGYIGHGQGLGGAYNYVDGGYSSATASTSVDIP----TSPRPSPSSKASLYL 329
GYG+ G AY YS + S S P TSP SP+S +
Sbjct: 1550 GYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSAT 1609
Query: 330 TPSTDPFHTQLRSTCLIPSR*PCPNPTRSSNTCHIT*RSTLRFPSTFPRHTQSKRRCLIP 509
+PS P T PS P +P+ S + + S P T P ++ +
Sbjct: 1610 SPSYSPTSPSYSPTS--PSYSP-TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY--- 1662
Query: 510 TRTS*QALPRQGARAPALPSREARS---LPRQGSSAPTLPRGETRAIPRRKLKCPYRSPT 680
+ TS P + +P PS S P S +PT P + P P SPT
Sbjct: 1663 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPT 1721
Query: 681 PL*NTSVSPSRCPSTGPY 734
+ SPS P++ Y
Sbjct: 1722 SPSYSPTSPSYSPTSPSY 1739
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 534 PRQGARAPALPSREARSLPRQGSSAPTLPRGETRAIPRRKLKCPYRSPTP 683
P Q + PALPSR SLP + S P++ E P + + P P
Sbjct: 105 PSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPP 154
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.94
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 1/161 (0%)
Frame = +3
Query: 258 TASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCL-IPSR*PCPNPTRSSNTCHI 434
T STS TS SS S +TP+ P T ST + IP P + +N+ +
Sbjct: 224 TTSTSCTTSTSIPTGGSSSLSTPITPTVPP--TSTSSTSIPIP---PTSTSSTDTNSSPL 278
Query: 435 T*RSTLRFPSTFPRHTQSKRRCLIPTRTS*QALPRQGARAPALPSREARSLPRQGSSAPT 614
ST ST T + + PT +P + + P A S G+S+
Sbjct: 279 PTTSTSCTTSTSIPPTGNSTTPVTPT------VPPTSTSSTSTPPPPA-STSSTGTSSSP 331
Query: 615 LPRGETRAIPRRKLKCPYRSPTPL*NTSVSPSRCPSTGPYP 737
LP T + S TP+ +V P+ ST P
Sbjct: 332 LPSTSTSCTTSTSIPPTGNSTTPV-TPTVPPTSTSSTSTPP 371
Score = 27.5 bits (58), Expect = 2.2
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 2/168 (1%)
Frame = +3
Query: 240 GGYSSATASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPNPTRSS 419
G SS STS TS P+ ++ +TP+ P T ST P P + +
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPP--TSTSSTSTPPP--PASTSSTGT 381
Query: 420 NTCHIT*RSTLRFPSTFPRHTQSKRRCLIPTRTS*QALPRQGARAPALPSR--EARSLPR 593
++ + ST ST T + + PT +P + P + + S+P
Sbjct: 382 SSSPLLSTSTSCTTSTSIPPTGNSTTPVTPT------VPPTSSSTPLTTTNCTTSTSVPY 435
Query: 594 QGSSAPTLPRGETRAIPRRKLKCPYRSPTPL*NTSVSPSRCPSTGPYP 737
+ + P T + PY S TP+ +T ++ + C ++ P
Sbjct: 436 TSTPVTSTPLATTNCTTSTSV--PYTS-TPVTSTPLTTTNCTTSTSIP 480
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 249 SSATASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPS 386
SS AS ++ + +P + A++ +P + F QLRST +PS
Sbjct: 281 SSVEASGWTEVGKNKKPVIARSATVERSPISQIFGGQLRSTLRVPS 326
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 634 VPYPVES*SARTAALPRCETRRCPRQGARRQAPTPVHV 747
+P P S S R +L R + PR G R++P+P H+
Sbjct: 330 LPAPTSSQSLRLGSLHRSRSPS-PRSGRPRRSPSPSHL 366
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 249 SSATASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLRSTCLIPSR*PCPN 404
S + AS +++ PT P S S+ PS+ P + +++ P C N
Sbjct: 9 SVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENCSN 60
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 377 YPVKVAVPQPYEVVKHVPYHVKEYVKV 457
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 459 PSTFPRHTQSKRRCLIPTRTS*QALPRQGARAPALPSREARSLPRQGSSAPT 614
P PR S R P +S +A+ A PA+P R A +LP G+++ T
Sbjct: 362 PPPPPRSAPSTGRQPPPLSSS-RAVSNPPAPPPAIPGRSAPALPPLGNASRT 412
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 555 PALPSREARSLPRQGSSAPTLPRGETRAIPRRKLKCPYRSPTPL*NTSVSPSRCPSTGPY 734
P+LP SLP +AP LP A P P P P +P+ P+ P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLP----PAAPAPPPAPAPA 483
Query: 735 PRA 743
P A
Sbjct: 484 PAA 486
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 111 QLCFLSSSSHWQPLLLPAGKLSRA 40
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 252 SATASTSVDIPTSPRPSPSSKA-SLYLTPSTDP 347
S T STS D+PTS PS ++ A + +PS P
Sbjct: 325 SMTNSTSTDLPTSNLPSQNAPARPVEPSPSIQP 357
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/103 (23%), Positives = 29/103 (28%), Gaps = 6/103 (5%)
Frame = +2
Query: 320 PVPYAVDRPVP----YPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVKVP--VHXXXXX 481
P PY PV P++ H PYP P PY+ + P
Sbjct: 190 PPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPYYYPQRATSPSLKQVPTYL 249
Query: 482 XXXXXXXXXXTYQLTGLTPSRCSCPSPTQSRSTFPTPSRFQCP 610
TY L P SP Q +P CP
Sbjct: 250 GTHVLQQDQSTYDQKVLMPPASYLSSPNQYTLKNVSPGNPACP 292
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 192 YIGHGQGL--GGAYNYVDGGYSSATASTSVDIPTSPRPSPSSKASLYLTPSTDPFHTQLR 365
Y+ + GL A Y S+ T STS T+ + ++ +L ++ ++ P T +
Sbjct: 730 YLAYAAGLWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSIS 789
Query: 366 STC 374
TC
Sbjct: 790 GTC 792
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 347 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 454
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 540 QGARAPALPSREARSLPRQGSSAPTLPRGETRAIPRRKLKCPYRS---PTPL*NTSVSPS 710
QG +PA LP QGS P ET++ K P + TPL + PS
Sbjct: 511 QGLPSPATTDSNTHMLPSQGSLLPPSSISETKSF-STKASTPLSTDDIATPLSSAPNPPS 569
Query: 711 RCPS 722
P+
Sbjct: 570 VMPT 573
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 549 RAPALPSREARSLPRQGSSAPTLPRGET 632
RA A+PS++A + P ++ P PR ++
Sbjct: 12 RAHAVPSQDATTTPDNANNVPKEPRAQS 39
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 228 NYVDGGYSSATASTSVDIPTSPRPSPSS-KASLYLTPST 341
+Y D S +STS PTS +PSS ++S L PS+
Sbjct: 105 SYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSS 143
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 561 LPSREARSLPRQGSSAPTLPRGETRAIPRRK-LKCPYRSPTPL*NTSVSPSRCPS 722
+PS + +LP SAP+ PR A+P K L+ + L N + + R PS
Sbjct: 231 MPSPPSSALPVSLVSAPSPPRATNVAVPCLKHLESSEQGNNLLINKAFTSPRLPS 285
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 531 LPRQGARAPA--LPSREARSLPRQGSSAPTLPRGETRAIPRRKLKCPYR-SPTPL*NTSV 701
+P+ ++AP LPS +A +P ++ P T +P+ P P P ++ +
Sbjct: 1014 VPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEI 1073
Query: 702 SPSRCPSTGP 731
PS P
Sbjct: 1074 PSIPAPSGAP 1083
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 192 YIGHGQGLGGAYNYVDGGYSSATA 263
YIG G LG N V G Y ATA
Sbjct: 391 YIGPGLNLGWLNNNVAGHYKRATA 414
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 594 QGSSAPTLPRGETRAIPRRKLKCPYRSPT 680
+ +S P LP+ E +IP++ +K + T
Sbjct: 33 ESTSLPRLPKSEDESIPKQSIKSKNKKKT 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,630
Number of Sequences: 5004
Number of extensions: 55924
Number of successful extensions: 240
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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