Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1447
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    27   2.8  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    27   2.8  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 255 AFLSRPYKRSNVLVIQFQYSIRYDKYIKNAIQ--FNSIQCMYNLL 127
           A+LS+P +  N L I F   + Y+K ++N I+     I  +Y LL
Sbjct: 119 AYLSKPEESYNFLTIYFSTLLSYEK-VENLIKKSLTVIDSLYGLL 162


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 538 LAHIICMEWDRLLTFAAR 591
           LAH+I +EWDRL + + R
Sbjct: 80  LAHLIALEWDRLPSTSVR 97


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
 Frame = +2

Query: 14  FSNKSNILFNLYTIIL-NEIYNTHV---HTTRFETTISRSIYNK--LYIH*IELN*IAFL 175
           FSN + +LF+L T+I+ N     ++   +  R+   +SR+  NK  + I  +EL  + F 
Sbjct: 264 FSNDNELLFSLATLIVENNPKKENIIPKYYLRYLQRLSRTEINKEIIEIEKLELEVVQFQ 323

Query: 176 IYLS*RMEY*NWITNTLERL 235
           + ++  +     +TNT+E L
Sbjct: 324 MSIANLINTQVEVTNTIEEL 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,880
Number of Sequences: 5004
Number of extensions: 57642
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)