Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1446
(752 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 27 0.16
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 27 0.16
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 25 0.49
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 24 1.1
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 24 1.1
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 24 1.1
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 24 1.1
U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein. 23 2.0
AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain tran... 23 2.0
AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein. 23 2.0
AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical pro... 23 2.6
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 27.1 bits (57), Expect = 0.16
Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = -3
Query: 198 HYLHTH--TFFR*WNKILDKYLFKLENNYRAMTV-TENIRYKLIF 73
HYL+ + TF WN+++++YL +E++ + ++ +++R K++F
Sbjct: 1186 HYLNRNEETF---WNELIEQYLHPIEDDKKKVSAELKDLRDKMVF 1227
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 27.1 bits (57), Expect = 0.16
Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = -3
Query: 198 HYLHTH--TFFR*WNKILDKYLFKLENNYRAMTV-TENIRYKLIF 73
HYL+ + TF WN+++++YL +E++ + ++ +++R K++F
Sbjct: 1186 HYLNRNEETF---WNELIEQYLHPIEDDKKKVSAELKDLRDKMVF 1227
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 25.4 bits (53), Expect = 0.49
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 495 SFYLIKK*ERSRTLEFIVSDAEI-NQFVL 412
SFY+ K R R+L+F+ S+ I +FVL
Sbjct: 182 SFYISDKAARPRSLQFVDSEGNILEEFVL 210
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 165 WNKILDKYLFKLENN 121
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 165 WNKILDKYLFKLENN 121
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 24.2 bits (50), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 165 WNKILDKYLFKLENN 121
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 24.2 bits (50), Expect = 1.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 165 WNKILDKYLFKLENN 121
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein.
Length = 322
Score = 23.4 bits (48), Expect = 2.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 376 YSHGNYLFHYIAENKLVYFCITDDKFQRSRAFL--FLNEIKRRFTTDLLTPHRQQYLT 543
Y+H N ++H + E + C +F ++ +L F N + D T H QY T
Sbjct: 39 YTHNNEMYHRVKEEPIYESC----RFSINQPYLNHFDNSVTPMVNHD-FTQHLSQYDT 91
>AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain
transcription factor Fushitarazu protein.
Length = 290
Score = 23.4 bits (48), Expect = 2.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 376 YSHGNYLFHYIAENKLVYFCITDDKFQRSRAFL--FLNEIKRRFTTDLLTPHRQQYLT 543
Y+H N ++H + E + C +F ++ +L F N + D T H QY T
Sbjct: 39 YTHNNEMYHRVKEEPIYESC----RFSINQPYLNHFDNSVTPMVNHD-FTQHLSQYDT 91
>AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein.
Length = 290
Score = 23.4 bits (48), Expect = 2.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 376 YSHGNYLFHYIAENKLVYFCITDDKFQRSRAFL--FLNEIKRRFTTDLLTPHRQQYLT 543
Y+H N ++H + E + C +F ++ +L F N + D T H QY T
Sbjct: 39 YTHNNEMYHSVKEEPIYESC----RFSINQPYLNHFDNSVTPMVNHD-FTQHLSQYDT 91
>AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical
protein protein.
Length = 205
Score = 23.0 bits (47), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 203 GNIVFFVSFTRLFTMPIYSVSWLEAL*SSLNMQLVRVISLK 325
G IVF + F + T PI+++ ++ ++ N+ L +V + +
Sbjct: 138 GLIVFILFFAQGLTSPIFNLVYVYCCDNNFNVFLRQVFTCR 178
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,223
Number of Sequences: 336
Number of extensions: 3961
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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