Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1446
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    66   7e-12
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   6.6  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
 Frame = +1

Query: 328 AEQILSKIPPHDDK-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFT 504
           A+ IL ++ P  +K  +   G+Y FHY+ +N + Y CI +  + R  AF +L E+   F 
Sbjct: 29  AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88

Query: 505 TDLLTPHRQQYLTP*T-VNFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMGKNIDN 681
                   Q  L P   V F   +    + Y+  R  DN+ +++ EL ++  +M KNI++
Sbjct: 89  NSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIED 148

Query: 682 M 684
           +
Sbjct: 149 L 149


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 481 NEIKRRFTTDLL 516
           NEIKRRF TDLL
Sbjct: 949 NEIKRRFLTDLL 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,454
Number of Sequences: 5004
Number of extensions: 64105
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)