Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1446
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 86 3e-17
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 85 4e-17
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 80 2e-15
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 69 3e-12
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 68 9e-12
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771... 64 9e-11
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 61 1e-09
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 54 1e-07
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 52 5e-07
03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531 29 5.2
01_05_0508 - 22804809-22805231,22805775-22806797 29 5.2
06_01_0867 - 6600847-6601413,6601954-6602181 28 6.9
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150... 28 9.2
01_02_0102 - 11148219-11148563,11148650-11149534 28 9.2
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 85.8 bits (203), Expect = 3e-17
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Frame = +1
Query: 247 AYIFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH--DDKLTYSHGNYLFHYIAENK 420
A ++++VARGTVVLA+++ N VA Q+L ++P D ++Y+ Y+FH +
Sbjct: 2 AILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTDG 61
Query: 421 LVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEMKHYSE 600
+ C+ D+ R F FL +I RF F RVL+ +M +YS
Sbjct: 62 ITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQQMDYYSN 121
Query: 601 SRDLDNISRVHGELDELKNIMGKNI-------DNMAMAXEKSLNCLGN 723
+ D I+R+ GE+ +++ +M NI D + M +K+ N GN
Sbjct: 122 DPNADRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGN 169
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 85.4 bits (202), Expect = 4e-17
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Frame = +1
Query: 247 AYIFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDKLTYSHGNYLFHYI----- 408
A ++++VARGTVVLA+++ GN VA +IL K+PP + +L ++ Y+FH +
Sbjct: 2 AIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPPP 61
Query: 409 -AENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEM 585
A + L + C+ +D F R FL+L +I+ RF + F RVL +M
Sbjct: 62 AAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQM 121
Query: 586 KHYSESRDLDNISRVHGELDELKNIMGKNIDNMAMAXEK 702
+++S + D ++R+ G E+ +M NI+ + E+
Sbjct: 122 EYFSSNPSADTLNRLRG---EIHTVMVDNIEKILDRGER 157
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 79.8 bits (188), Expect = 2e-15
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Frame = +1
Query: 253 IFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYF 432
I++ VARGTV+LA+Y GNFT +A Q L K+P ++K TY+ + F+Y+ E+ Y
Sbjct: 7 IYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFNYLVEDGFTYC 66
Query: 433 CITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVN--FGRVLATEMKH-YSES 603
+ + R FL+ +K F T + ++N FG L M++
Sbjct: 67 VVAVESVGRQIPIAFLDRVKDDF-TKRYAGGKAATAAANSLNRDFGSKLKEHMQYCVDHP 125
Query: 604 RDLDNISRVHGELDELKNIMGKNIDNMAMAXEK 702
++ +++V ++ E+K +M +NI+ + EK
Sbjct: 126 EEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 158
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 69.3 bits (162), Expect = 3e-12
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Frame = +1
Query: 253 IFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYF 432
++S VARG VVLA +A GNF VA Q L K+P +++ +Y+ + F+Y + Y
Sbjct: 10 VYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFNYHVHDGFTYC 69
Query: 433 CITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TV--NFGRVLATEMKHY-SES 603
+ + R F+ +K F+ + + + T ++ +G L MK+ +
Sbjct: 70 VVATESAGRQLPVGFIERVKEDFSKK-YSGGKAKNATANSLKREYGPKLKEHMKYCDAHP 128
Query: 604 RDLDNISRVHGELDELKNIMGKNIDNMAMAXEK 702
++D +++V ++ E+K +M +NI+ + EK
Sbjct: 129 EEIDKLAKVKAQVTEVKGVMMQNIEKVLDRGEK 161
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 67.7 bits (158), Expect = 9e-12
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Frame = +1
Query: 253 IFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAEN----- 417
I++ VARGTVVLA+Y GNFT +A Q L K+P ++K TY+ + F+Y+ E+
Sbjct: 7 IYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDGFSSN 66
Query: 418 --------KLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVN--FGR 567
L Y + + R FL+ +K F T + ++N FG
Sbjct: 67 RIGILGIQGLAYCVVAVESVGRQIPIAFLDRVKEDF-TKRYGGGKAATAAANSLNREFGS 125
Query: 568 VLATEMKH-YSESRDLDNISRVHGELDELKNIMGKNIDNMAMAXEK 702
L M++ ++ +++V ++ E+K +M +NI+ + EK
Sbjct: 126 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 171
>12_02_1272 +
27475302-27475491,27476792-27476876,27477076-27477196,
27477443-27477586
Length = 179
Score = 64.5 bits (150), Expect = 9e-11
Identities = 42/145 (28%), Positives = 70/145 (48%)
Frame = +1
Query: 253 IFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYF 432
I+++VARGTVVLA++ GNF ++A Q L K+P D++LTY+ + F+++ Y
Sbjct: 7 IYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFNFLIHQGYAYC 66
Query: 433 CITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEMKHYSESRDL 612
+ + R L+ IK F + +Y M H E +
Sbjct: 67 VVATESSGRQIPLALLDMIKEDFNKRPRLGEQMKYC--------------MDHPEE---V 109
Query: 613 DNISRVHGELDELKNIMGKNIDNMA 687
+++V ++ E+K IM +NID A
Sbjct: 110 SKLAKVKAQVSEVKGIMMENIDKAA 134
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 60.9 bits (141), Expect = 1e-09
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Frame = +1
Query: 256 FSIVARGTVVLAKYATCQ-GNFTEVAEQILSKIPPHDD------KLTYSHGNYLFHYIAE 414
++ VARG VV+A++ N VA QIL ++ D ++Y+ ++FH
Sbjct: 6 YAAVARGAVVMAEHGDAAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVKRT 65
Query: 415 NKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEMKHY 594
+ + C+ DD R F FL +I RF F RVL +M +Y
Sbjct: 66 DGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALTALAYAMNDEFSRVLGQQMDYY 125
Query: 595 SESRDLDNISRVHGELDE 648
S + D ISR+ GE+D+
Sbjct: 126 SNDPNADRISRMRGEMDQ 143
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 54.0 bits (124), Expect = 1e-07
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Frame = +1
Query: 253 IFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDD---------KLTYSHGNYLFHY 405
I++ VARGT VLA+Y GNF +A Q L ++P + +Y+ + F++
Sbjct: 24 IYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFNF 83
Query: 406 IAENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVN--FGRVLAT 579
+ Y + + ++ + FL +K F L ++N +G V+
Sbjct: 84 LLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAK-SLNKEYGPVIKQ 142
Query: 580 EMKH-YSESRDLDNISRVHGELDELKNIMGKNIDNM 684
M++ S +++ +V ++ E+KNIM +NI+ +
Sbjct: 143 HMQYVLDHSEEIEKTLKVQAQVSEVKNIMLENIEKV 178
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 52.0 bits (119), Expect = 5e-07
Identities = 31/121 (25%), Positives = 54/121 (44%)
Frame = +1
Query: 340 LSKIPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLT 519
LSK +++ G YLFHYI E ++ Y + D + + AF +L ++K F
Sbjct: 43 LSKGQHEASRMSIETGPYLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGN 102
Query: 520 PHRQQYLTP*TVNFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMGKNIDNMAMAXE 699
+ F + K Y ++R N+++++ EL E+ IM +N + E
Sbjct: 103 QIETAARPYAFIKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTRNFQEVLGVGE 162
Query: 700 K 702
K
Sbjct: 163 K 163
>03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531
Length = 261
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 740 LSYQVWFPKQFKLFSXAXAM-LSMFLPIIFFNSSNSP*TLEM 618
L ++V + +K+FS A + S LP++ FN+ N P L M
Sbjct: 211 LDFKVMKERMYKIFSNAIVVSYSQLLPVVPFNAFNPPPPLIM 252
>01_05_0508 - 22804809-22805231,22805775-22806797
Length = 481
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 262 IVARGTVVLAKYATCQGNFTEVA--EQILSKIPPHDDKLTYSHGNYLFHYIAENK 420
++ G + A+C N T VA ++I + IP H + Y + Y HY E K
Sbjct: 323 LLGGGGYTINHVASCWCNETAVAIGKEIPNDIPKHGFDVFYKNQEYKLHYKLETK 377
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 240 NNRVNDTKNTMLPNHYLHTHTFFR*WNKILDKYL-FKLEN 124
N+ +D + + N Y + FF W+KIL Y+ + LEN
Sbjct: 203 NSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYTLEN 242
>01_06_1834 +
40214378-40214563,40214728-40214818,40215006-40215093,
40215444-40215695,40215927-40216101,40216243-40216329,
40216445-40216513,40216638-40216734,40217010-40217092,
40217373-40217480,40217672-40217793,40217921-40218028,
40218121-40218194,40218492-40218617,40219655-40219722,
40219930-40220079,40220164-40220214,40220678-40220734,
40220824-40220970,40221064-40221155,40221516-40221625,
40221728-40221791,40221883-40222032,40222554-40222788
Length = 929
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = -3
Query: 339 NLLCDFSEITLTSCIFSEDYSASSHDTEYIGIVNNRVNDTKNTMLPNHYLHTHTFFR*WN 160
N +C +E T +DY S+ GI+N D K ++ HT W
Sbjct: 611 NCMCSIAEFLKTDSSLEKDYYKMSNQLSDFGILNKMHLDDKTGAYFDYGNHTEKVRLRWY 670
Query: 159 KILDKYLFKLE 127
++ + + + E
Sbjct: 671 EVRENDVMRRE 681
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 740 LSYQVWFPKQFKLFSXAXAM-LSMFLPIIFFNSSNSP 633
L+++V + +K+ S A + S FLP++ FN+ N P
Sbjct: 257 LNFKVMKERMYKIISNAIVVSYSHFLPVVPFNAFNPP 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,126
Number of Sequences: 37544
Number of extensions: 337831
Number of successful extensions: 749
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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