Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1446
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      79   5e-15
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                45   8e-05
SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45)                    31   1.3  
SB_11109| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_42741| Best HMM Match : CN_hydrolase (HMM E-Value=4.6e-14)          28   7.1  
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/92 (42%), Positives = 53/92 (57%)
 Frame = +1

Query: 211 CVLCVVYAIIHNAYIFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGN 390
           C+L   Y+     Y +S++ARG  +L  YA   GNF +V   IL KIP +D K TY  G+
Sbjct: 92  CLLNTSYSGKMPLY-YSLIARGGTILVDYAETTGNFQQVTYTILEKIPGNDTKCTYVSGS 150

Query: 391 YLFHYIAENKLVYFCITDDKFQRSRAFLFLNE 486
           Y FH I E+ LVY C+ D +F +   + FL E
Sbjct: 151 YQFHVIVEDGLVYLCMADKEFGKKDPYAFLEE 182


>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = +1

Query: 328 AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFT 504
           A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I   F 
Sbjct: 34  AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFN 93

Query: 505 TDLLTPHRQQYLTP*TVNFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMGKNIDNM 684
            +      +       + F   +    ++Y +SR   N++R++ EL +++ +M +NID++
Sbjct: 94  REYGHQVSRATRPYPFIEFDTYMQKAKRNYQDSRTRRNLNRLNDELVDVQRVMVQNIDDV 153

Query: 685 AMAXEK 702
               E+
Sbjct: 154 LQRGEQ 159


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 328 AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFT 504
           A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I   F 
Sbjct: 34  AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFN 93

Query: 505 TD 510
            +
Sbjct: 94  RE 95


>SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45)
          Length = 299

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +2

Query: 71  KKINLYLIFSVTVIAR*LFSSLNKYLSKILFHYLKKVCVC 190
           KK+N Y +  + ++AR +++   +YL+K  F YL ++ +C
Sbjct: 39  KKVNRYKLIYIRIVARDMYTEGWRYLTK--FSYLMELALC 76


>SB_11109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
 Frame = +1

Query: 376 YSHGNYLFHYIAENKLVYFC---ITDDKFQRSRAFLFLNEIKRRFTTDL--LTPHRQQYL 540
           +  G+ L+    +  LV +C   I  D  +R R      +    F ++    TPH Q Y 
Sbjct: 45  FGEGDSLYALEIQESLVGYCCRRIKRDFKKRGRQRRRRRQKTMEFDSEFNNTTPHLQGYF 104

Query: 541 TP*TVNFGRVLATEMKHYSESRDLDNISRVHGELDELKN 657
              T ++         H +E  D  NI+  HG  D LK+
Sbjct: 105 YDFTESYCNERGRLKSHATEILDQKNIAVCHGNSDPLKS 143


>SB_42741| Best HMM Match : CN_hydrolase (HMM E-Value=4.6e-14)
          Length = 255

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 242 TMPIYSVSWLEAL*SSLNMQLVRVISLKSQSRFYQR 349
           TM   SVSWL+   ++L+  +V  I +K Q  +Y R
Sbjct: 56  TMDGNSVSWLKQKAATLDAAIVGSIIIKEQENYYNR 91


>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 186 CVNSDLVTLCSLCRLRDYSQCLYIQY 263
           C NS+++  C +C L  + +C  + Y
Sbjct: 268 CQNSNVILFCDMCNLAVHQECYGVPY 293


>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 40  RYTINIPNSFQENQFIPNIFCHGHC 114
           R+ IN+P+ F+ N ++   FC  HC
Sbjct: 142 RFNINMPHKFKVNNYLSPTFC-DHC 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,484,425
Number of Sequences: 59808
Number of extensions: 429564
Number of successful extensions: 1142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)