Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1446
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-8|AAK18869.1|  201|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z50863-6|CAA90739.1|  250|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z50858-7|CAA90725.1|  250|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical...    29   4.7  
AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    28   8.2  

>U00031-8|AAK18869.1|  201|Caenorhabditis elegans Hypothetical
           protein B0361.10 protein.
          Length = 201

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
 Frame = +1

Query: 391 YLFH-YIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGR 567
           YL H Y+  + L   C+TD ++Q+  A  FL  +   FTT +         +    ++  
Sbjct: 66  YLVHCYVRNDGLSAVCVTDAEYQQRVAMSFLGRVLDDFTTRVPATQWPGIRSDKDCSY-T 124

Query: 568 VLATEMKHYSESRDLDNISRVHGELDELKNIMGKNIDNMAMAXEK 702
            L   ++ +   R+ D ++RV  E++E K +M   I ++    EK
Sbjct: 125 GLKDLLEKWQNPREADPMTRVQEEVEETKMVMHNTIQSVLDRGEK 169


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 298  ATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 402
            ATC G+ T V  Q +  I P + ++TYS G+ + H
Sbjct: 1175 ATCSGSSTAVGSQCIGVIVPTNAQVTYSDGSMVLH 1209


>Z50863-6|CAA90739.1|  250|Caenorhabditis elegans Hypothetical
           protein F44A6.5 protein.
          Length = 250

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 229 YAIIHNAYIFSIVAR---GTVVLAKYATCQGNFTEVAEQIL 342
           Y +I  +  FS  ++   G +V AK+  CQGN T    +IL
Sbjct: 205 YTVIKGSVCFSAHSKRKGGAMVFAKFNRCQGNITRDVNEIL 245


>Z50858-7|CAA90725.1|  250|Caenorhabditis elegans Hypothetical
           protein F44A6.5 protein.
          Length = 250

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 229 YAIIHNAYIFSIVAR---GTVVLAKYATCQGNFTEVAEQIL 342
           Y +I  +  FS  ++   G +V AK+  CQGN T    +IL
Sbjct: 205 YTVIKGSVCFSAHSKRKGGAMVFAKFNRCQGNITRDVNEIL 245


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = -3

Query: 327  DFSEITLTSCIFSEDYSASSHDTEYIGIVNNRVNDTKNTMLPNHYLHTHTFFR*WNKILD 148
            ++  ITL + I S ++ A  HDT  I   +  +N T+NT+  N  LHT          +D
Sbjct: 2484 NYQVITLLNNIISHNF-ALYHDT--IVAHDVAINMTRNTLFSNTGLHTLDIHANSKLSVD 2540

Query: 147  KYLFKLENNYRAMTVTENIRY 85
            K  F   N Y  + +    +Y
Sbjct: 2541 KNTFFYNNFYDNLALGHGQQY 2561


>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 361 DDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTDLLTPHRQQYL 540
           +DKL+ S G  LFH++A   ++   +   KF     +  L E+   F       H  +  
Sbjct: 150 NDKLSISTGVLLFHHVASIYVLSTAVLSKKFLLYAYWAMLMEVSSIFLHTRSILHISKLS 209

Query: 541 TP*TVNFGRVLA 576
           T   + F +V++
Sbjct: 210 TTSMIGFSKVVS 221


>AC090999-22|AAK26159.1|  481|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.17a protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 436 ITDDKFQRS-RAFLFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEMKHYSESRDL 612
           + DD  + S R  ++LNE  RR     L+    Q+LTP   +  ++L    K YSE R  
Sbjct: 76  VADDVIESSSRPIVYLNETCRRVFEICLSI---QFLTPHLADIKQILGNFWKTYSEPRIA 132

Query: 613 DNI 621
           + +
Sbjct: 133 EEV 135


>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 27/117 (23%), Positives = 49/117 (41%)
 Frame = +1

Query: 292 KYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAF 471
           KY      +     + L K+ P D +LTY      F Y  +          D FQ++ + 
Sbjct: 302 KYMFTHNTYDSEIVEALIKLDPTDVELTYMIAQLCFEYAGKRFQGEILKVTDHFQQTLS- 360

Query: 472 LFLNEIKRRFTTDLLTPHRQQYLTP*TVNFGRVLATEMKHYSESRDLDNISRVHGEL 642
              N++   +T++L   +R++YL   T +F ++     K   E+R    + +V   L
Sbjct: 361 ---NDLHHYYTSEL---NRERYLKRLT-DFMKINKLIQKSIWETRPHRELGKVFNVL 410


>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 250 YIFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDKLTYSHGNYLFHYIAENKLV 426
           YI ++ + G+  L K      N  E AE  +    PH D K    H  Y+FH ++E   +
Sbjct: 369 YIVALSSVGSFYLFK----NENIAEYAELDIKFSAPHFDAKSWLKHFLYIFH-VSEINTI 423

Query: 427 YFCITDDK 450
            F ++D+K
Sbjct: 424 AFNLSDEK 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,621
Number of Sequences: 27780
Number of extensions: 345513
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)