Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1443
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    34   0.010
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   0.90 
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    24   8.4  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 33.9 bits (74), Expect = 0.010
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 420 AMKFAXRSVSANDIRKYKMXAQTLQQSRGFGTNFRF 313
           AMK A RSVS  ++R+Y+  A  L  SRG  T F+F
Sbjct: 759 AMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
 Frame = -1

Query: 417 MKFAXRSVSANDIRKYKMXAQTLQQSRGFGTNFRFPTNXXAXXXXXXXXGDQPTSXRRGV 238
           M +  R+ SAN I    +  + +  S    T     T   A         D+  S     
Sbjct: 544 MPYLNRATSANSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTKKDRSVSFNINK 603

Query: 237 XXXXTDILCLARDL-GASPPSRYXXTNVLSVCLACRP-TTPTWRLAPAG 97
                 +   A D  G +   R   TN    C  C+  TTP WR +P G
Sbjct: 604 NAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -3

Query: 412 VRXXLRVRQRHPQVQDVXADPAAEPRLWNQ 323
           ++  +   Q+H Q ++V  DP+    +W +
Sbjct: 38  IKEIVAFAQKHMQTKEVRVDPSLNKEVWKR 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,073
Number of Sequences: 5004
Number of extensions: 22266
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)