Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1443
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...    58   4e-09
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...    56   1e-08
02_03_0391 - 18471625-18472125                                         31   0.50 
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073...    28   3.5  
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325...    27   4.6  
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    27   8.1  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    27   8.1  
01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509...    27   8.1  

>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = -1

Query: 420 AMKFAXRSVSANDIRKYKMXAQTLQQSRGFGTNFRF 313
           +MK+A RSVS  DIRKY+  AQTLQQSRGFGT FRF
Sbjct: 745 SMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRF 780


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 420 AMKFAXRSVSANDIRKYKMXAQTLQQSRGFGTNFRF 313
           +MK+A RSVS  DIRKY+  AQTLQQSRGFG+ FRF
Sbjct: 754 SMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 789


>02_03_0391 - 18471625-18472125
          Length = 166

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -3

Query: 358 ADPAAEPRLWNQFQIPNKXGSYRGHGYFNGRPAHVQXEG 242
           ADPAA PR   +F  P   GS RG+G   G   H Q +G
Sbjct: 115 ADPAASPRCGARFGGPAAAGSGRGYG---GHGHHHQHQG 150


>07_03_1170 -
           24505743-24505875,24506087-24506475,24507133-24507369,
           24507967-24508136,24510196-24510316
          Length = 349

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 182 GGDAPRSRARHRISVQVVVTPLLLD 256
           GGDA  ++  H +SV V+V+PL  D
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPLTGD 235


>07_03_1144 +
           24331104-24331292,24331387-24331611,24332133-24332521,
           24332762-24332856,24333300-24333673
          Length = 423

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 182 GGDAPRSRARHRISVQVVVTPLL 250
           GGDA  +R  H +SV  +V PL+
Sbjct: 173 GGDADTTRLYHLLSVPAIVAPLI 195


>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
            20597578-20597730,20597816-20597927,20598022-20598352,
            20598524-20598737,20598842-20598931,20599669-20599924,
            20600029-20600141,20600733-20600831,20600915-20600980,
            20601018-20601167,20601278-20601368,20601710-20601749,
            20603888-20605247,20605478-20605507,20605834-20605885,
            20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 219  ILCLARDLGASPPSRYXXTNVLSVCLACRP 130
            +LCL R  G SP   +  T ++ VC   RP
Sbjct: 1060 LLCLMRGRGVSPDIVHYNTVIVGVCREGRP 1089


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 274 NGRPAHVQXEGGDDDLXRYSVSRSRPRGISTISIXXN*RPVCLSXVSPHHTNMAPGPGR 98
           +GR +  Q +     L  +    S+P GIS  ++    + +    + PH  N+ P PG+
Sbjct: 484 SGRASIPQSDMDKSSLGAHQSLSSQPPGISFATVHATEKNMMCDVLQPHSQNLCP-PGQ 541


>01_06_0667 -
           31048987-31049134,31049630-31049865,31050720-31050926,
           31051005-31051197,31051282-31051652
          Length = 384

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 87  AYVNRPGPGA--MLVWWGDTXDKQTGR 161
           A++   G GA   +V WGDT D  +GR
Sbjct: 134 AFITLEGAGADKTIVQWGDTADSPSGR 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,189,441
Number of Sequences: 37544
Number of extensions: 194444
Number of successful extensions: 488
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)