Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1443
         (420 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         68   3e-12
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   3.6  
SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)                        28   3.6  
SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = -1

Query: 420 AMKFAXRSVSANDIRKYKMXAQTLQQSRGFGTNFRFP 310
           AMKFA RSVS NDIRKY+M AQTLQQSRGFG NFRFP
Sbjct: 556 AMKFARRSVSDNDIRKYEMFAQTLQQSRGFGGNFRFP 592


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 385  RHPQVQDVXADPAAEPRLWNQFQIPNKXGSYRGHGYFNGRP 263
            RH Q   V   P   P LW  + +    G+ R HG   G P
Sbjct: 1579 RHSQTVRVPRCPEDRPPLWEGYSLLYVQGNERAHGQDLGSP 1619


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 189 SPPSRYXXTNVLSVCLACRPTTPTWR 112
           SPPS Y     L+ C  C  ++PT R
Sbjct: 50  SPPSEYCRVKPLNGCFKCNASSPTER 75


>SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)
          Length = 216

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 301 GSYRGHGYFNGRPAHVQXEGGDDDLXRY 218
           G Y G G F G  A+   EG DD L  Y
Sbjct: 174 GEYNGEGGFEGDEAYGYEEGYDDGLKYY 201


>SB_48331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 100 GRGQAPCWCGGATRXTNRQDVSSXISRWWRCPEVASE-TQNIC 225
           G+  + C CG A   +   D+   I   WR    +S  TQ IC
Sbjct: 309 GKPYSTCDCGSAAPSSRLHDIKGRIWMGWRSTRRSSRPTQAIC 351


>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 161 TSCLFVXRVAPPHQHGAWPRPVHVCDSDADIGRV 60
           TSCLF+  V  P +H  W R   + ++ + IG++
Sbjct: 65  TSCLFLRDVLVPKKHYIWRREPDLWNTMSVIGQL 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,081
Number of Sequences: 59808
Number of extensions: 203232
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)