Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1442
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.55
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 29 0.96
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.7
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 3.9
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 5.1
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 6.7
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 26 6.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.7
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 25 8.9
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.9
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 25 8.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 8.9
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.9
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.55
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = +1
Query: 256 TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 435
T + TP+ +ST+ +SIP+ S + S+ I + + I SS + +T I S
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSS 1323
Query: 436 PLGATTYTTPFVQTVPIASTASLPAQLI 519
+ T +TP + + S+ + + +
Sbjct: 1324 TVVNT--STPITSSSVLNSSTPITSSTV 1349
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/78 (19%), Positives = 31/78 (39%)
Frame = +1
Query: 286 ASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTP 465
A T + + + ++QP+ A + P + S P +++ G P
Sbjct: 255 AGTVFYNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQVFPATQMP 314
Query: 466 FVQTVPIASTASLPAQLI 519
F+Q + S+PA ++
Sbjct: 315 FLQQPKVTQNISIPADMV 332
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 383 ATSLLAPT-SLPTPTSQVALLEPLPTRHPS 469
ATS L PT S P TS +L LPT +PS
Sbjct: 306 ATSTLQPTTSSPITTSAPSLSSALPTTYPS 335
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYIT------PNTYIASGPLGATTYTT 462
VSS+PL S + +H P P SY++ ++ + + + S P +Y+T
Sbjct: 460 VSSVPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYST 519
Query: 463 PFVQTVPIASTASL 504
T PI + SL
Sbjct: 520 SSNFTTPITISTSL 533
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +1
Query: 301 VSSIPLISQPIAYSAHFIKKRSPQWPVSYIA---PSSYITPNTYIASGPLGA-TTYTTPF 468
V+S IS P + S+ F K S + PS +I N+ + G T+ TT
Sbjct: 597 VNSPTSISSPSSKSSPFTKTTSKDTKSATTTDERPSDFIRLNSEESVGTSSLRTSQTTST 656
Query: 469 VQTVPIASTASLPAQL 516
+ + +STAS+P+Q+
Sbjct: 657 IVSNDSSSTASIPSQI 672
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 606 HQVQLQFARRSSCYILHDTSGVLCSYFNSRRFK 704
H L FA S Y + +LC Y NS +FK
Sbjct: 163 HGGPLSFAHGISPYNMDSQDFILCEYNNSTQFK 195
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = +2
Query: 386 TSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPRSSSDQEEVCPRAGDNLHR 565
TS +P S+ T Q+ + + R S+R PRS + VCP R
Sbjct: 376 TSGRSPNSMEA-TEQIGTIGTDGSMKRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKR 434
Query: 566 TYYLHRCSPRSFLSSSPATIC 628
+ +L R RS +S +C
Sbjct: 435 SEHLRR-HIRSLHTSEKPFVC 454
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 248
S I PW T+ + ISS GL+ L ++L+ H ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 397 SSYITPNTYIASGPLGATTYTTPFVQTVPIASTAS 501
S+ T +T I +G G+++ +TP TVP ST+S
Sbjct: 226 STSCTTSTSIPTG--GSSSLSTPITPTVPPTSTSS 258
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +1
Query: 175 SFHQEEVCCTCCVYRSCIILCY-----FSRRRTTYHGKTPLL 285
SFH ++ C CC Y + Y RRRTT G+ L
Sbjct: 26 SFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYL 67
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 419 PTSQVALLEPLPTRHP-SCRP 478
PTS +ALLE P HP SC P
Sbjct: 171 PTSLIALLELPPVIHPLSCVP 191
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +1
Query: 175 SFHQEEVCCTCCVYRSCIILCY-----FSRRRTTYHGKTPLL 285
SFH ++ C CC Y + Y RRRTT G+ L
Sbjct: 26 SFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYL 67
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 404 TSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPRS 514
T+ P P +++ P +PS R R HR H RS
Sbjct: 544 TNTPEPIQDLSI----PIHYPSSRVSRRHRFHRALRS 576
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 379 VSYIAPSSYITP-NTYIASGPLGATTY 456
V Y++P+ TP + +I PLG +TY
Sbjct: 806 VQYVSPALKATPPSVWIPKDPLGLSTY 832
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,816
Number of Sequences: 5004
Number of extensions: 53194
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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