Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1442
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0082 - 20595935-20596039,20596103-20596189,20596468-205965... 33 0.19
03_05_0081 - 20577619-20577632,20577760-20577998,20578817-205788... 33 0.19
03_05_0075 - 20525996-20526073,20527084-20527170,20527700-205278... 33 0.33
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 32 0.43
02_05_0570 + 30070338-30071606 32 0.57
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 32 0.57
03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965 31 1.3
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 3.1
05_01_0242 + 1804183-1806096 29 3.1
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 4.0
05_03_0090 - 8330283-8330831 29 4.0
08_01_0060 - 413088-413999 28 7.1
03_06_0546 - 34646946-34647289,34647542-34647608 28 7.1
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728... 28 9.3
>03_05_0082 -
20595935-20596039,20596103-20596189,20596468-20596586,
20596686-20596924,20597044-20597100,20597203-20597909,
20599827-20600192
Length = 559
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 229 ILCYFSRRRTTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYI 408
++ FSR G++P +AS + V L+ Q AY+A+F ++ Q S +APS+YI
Sbjct: 190 VIYAFSRPILVLLGESPEIASAAAVFVYGLVPQIFAYAANFPIQKFMQ-AQSIMAPSAYI 248
Query: 409 TPNT 420
+ T
Sbjct: 249 SAAT 252
>03_05_0081 -
20577619-20577632,20577760-20577998,20578817-20578873,
20579001-20579632,20582728-20583105
Length = 439
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +1
Query: 229 ILCYFSRRRTTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYI 408
++ FS+ G++P +A + + + LI Q AY+A+F ++ Q S +APS+YI
Sbjct: 169 VIYVFSKEILILLGESPEIAGAARLYVVGLIPQIFAYAANFPIQKFLQ-AQSIVAPSAYI 227
Query: 409 TPNTYIA 429
+ T A
Sbjct: 228 SAATLAA 234
>03_05_0075 -
20525996-20526073,20527084-20527170,20527700-20527818,
20527983-20528221,20528324-20528380,20528506-20529131
Length = 401
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +1
Query: 229 ILCYFSRRRTTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYI 408
++ FSR G++P +AS + V L+ Q AY+A+F ++ Q S +APS+Y
Sbjct: 41 VIYAFSRPILVLLGESPEIASAAAVFVYGLVPQIFAYAANFPIQKFLQ-AQSIVAPSAYT 99
Query: 409 TPNTYI 426
+ T +
Sbjct: 100 SAATLV 105
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 592 QEFSLIKSSYNLHGAPLVTSYTTPLVYSAPISTHV 696
Q F I+ S++L LV S T LV S PISTH+
Sbjct: 145 QSFGFIEESWSLAFGFLVVSVTAALVESHPISTHL 179
>02_05_0570 + 30070338-30071606
Length = 422
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = +2
Query: 446 PLPTRHPSCRPCRSHRLHHFPRSSSDQ--EEVCPRAGDNLHRTYYLHRCSPRS 598
P T C+PC HR H+ S D+ A D + R Y P S
Sbjct: 355 PFVTHFTGCQPCSGHRNEHYTGKSCDEGIRRALSFADDQVLRAYGFRHAGPLS 407
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = +2
Query: 374 GP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFP 508
GP T +APT PTP PLP RH C R R H P
Sbjct: 22 GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASP 64
>03_06_0686 + 35553179-35553553,35554028-35554399,35554486-35554965
Length = 408
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 419 PTSQVALLEPLPTRHPSCRPCRSHRLHHFPRSSSDQEE 532
PT+ A+ E P P S HH P +S+D EE
Sbjct: 87 PTTATAVAEEQPPTKPPATSTASSPTHHIPATSTDLEE 124
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 175 SFHQEE--VCCTCCVYRSCIILCYFSRR 252
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>05_01_0242 + 1804183-1806096
Length = 637
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 428 QVALLEPLPTRHPSCRPCRSHRLHHFPRSSSDQEEVCPRAG 550
++ LL PLP RH S P SHR + P S E P G
Sbjct: 7 RLRLLLPLPRRHLSTAPATSHR-NKIPADPSRTERPRPDPG 46
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 289 STSYVSSIPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 441
STS+ +P ++ P +Y+A+ + K SP+W + + S + T SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285
Query: 442 GATTYTTPFVQTVPIASTASL 504
G ++ T + + I + +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306
>05_03_0090 - 8330283-8330831
Length = 182
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 407 SLPTPTSQVALLEPLPTRH-PSCRPCRSHRLHH 502
SLPTP L PLP RH P+ CR L H
Sbjct: 87 SLPTPPLSSRHLYPLPPRHRPAPSLCRGDGLSH 119
>08_01_0060 - 413088-413999
Length = 303
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +2
Query: 368 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPRSSSDQEEVCPRA 547
HN ++S SL + + +P P P P LHH P S + P
Sbjct: 3 HNSSSSSSWDLDMSLGSHHHPLLFDQPPPPPPPPPPPPLPFHLHHHPLDPSPSSSLFPPP 62
Query: 548 GDNLHRTYYLH 580
+ H ++LH
Sbjct: 63 PHHHHHAHHLH 73
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +1
Query: 175 SFH-QEEVCCTCCVYRSCI 228
SFH E+ CC CCV+ C+
Sbjct: 79 SFHLPEDPCCDCCVHALCL 97
>06_03_0794 -
24671955-24672362,24672469-24672505,24672804-24672858,
24674044-24674167,24674670-24674903
Length = 285
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 364 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 471
+PQ + A TP + SGP G TTYT FV
Sbjct: 2 TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,301,235
Number of Sequences: 37544
Number of extensions: 412389
Number of successful extensions: 1477
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -