Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1442
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11) 31 0.77
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 30 1.8
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94) 28 9.5
SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6) 28 9.5
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 28 9.5
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 28 9.5
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001) 28 9.5
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 9.5
>SB_10933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 247 RRRTTYHGKTPLLASTSYVSSIP 315
RR T YHG TP ST Y SIP
Sbjct: 384 RRSTPYHGSTPYRGSTPYRGSIP 406
>SB_6849| Best HMM Match : EGF_2 (HMM E-Value=9.3e-11)
Length = 439
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 492 RCDRHGLHEGCRVGSGSKRATCDVGVGSDVGARS 391
+CD G H C++ +G K TCD G ++VG S
Sbjct: 76 KCDGCG-HGSCQISAGKKSCTCDYGWLNNVGDAS 108
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 365 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRSHRLHHFPRSSSDQ 526
LH+ T+LL P ++ P Q LL+P+ P + S HH+ ++ Q
Sbjct: 668 LHHQNHNTTLLQPVTITPPKPQHTLLQPVTITPPKPQHNTSTTSHHYTTKTTTQ 721
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 371 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPCRS 487
N P + LL LPT Q+ L +P P PS P RS
Sbjct: 278 NTPFVSRLLLALVLPTMHLQLLLTKPTPATPPSRAPTRS 316
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 HFIKKRSPQWPVSYIAPSSYITPNT-YIASGPLGATTYTTPFVQTVPIA-STASLP 507
H +K +P P + PS+ TP+T S P T +TP + PI ST S P
Sbjct: 5 HRLKLSTPSTPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTP 60
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = +1
Query: 274 TPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATT 453
TP T S P + + I +P P ++ PS+ TP+T S P +T
Sbjct: 26 TPSTPRTPSTPSTPCTPSTPSTPSTPITPSTPSTPCTHSTPSAPSTPST--PSTPCTPST 83
Query: 454 YTTPFVQTVPIASTASLPA 510
+TP + P ST S P+
Sbjct: 84 PSTPSTPSTP--STPSTPS 100
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 376 PVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPAQLI*SRRGLPP 543
P + +AP + + P T +A A TT VPI TA+ P + S + P
Sbjct: 1348 PETTVAPVTTVIPETTVAPDTTVAPKSTTLASTVVPITETAAGPETTLASETTMAP 1403
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 391 APSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 507
APSS +T +GP TT P V T+ +TA+ P
Sbjct: 804 APSSNPNESTTPTTGPTTGTTALPPGVTTITTPATATTP 842
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 394 PSSYITPNTYIASG----PLGATTYTTPFVQTVPIASTASLPA 510
P+ TP T +G P G TT TTP T P+ + PA
Sbjct: 809 PNESTTPTTGPTTGTTALPPGVTTITTPATATTPLPPGVTTPA 851
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 358 KRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 507
K++ PVS ++ TP + P T TP +T P ASTA P
Sbjct: 291 KKTTTKPVSQPGETTASTPKAPGPTQPASTTIEATPQPETQPGASTAKAP 340
>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
Length = 450
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 461 HPSCRPCRSHRLHHFPRSSSDQEEVCPRAGDNL 559
H SC PC S HH P S S E + G L
Sbjct: 207 HRSCSPCLSTEPHHTPLSPSRVETHSHKEGVQL 239
>SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6)
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 223 CIILCYFSRRRTTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAP 396
C+ C F R G+ P + V+S S +A + + + SP PVS +AP
Sbjct: 80 CVKRCPFGYRVMNITGQAPFCDEENTVASGIGASARVAETVGYDTRASPWIPVSEVAP 137
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 196 CCTCCVYRSCIILCYFSRRRTTYHGKTPLLASTS 297
CC C C I C SRR+T G T + A S
Sbjct: 568 CCKTCTRPKCAIHC-SSRRQTKTSGNTKICACPS 600
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 365 LHNGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCRPC 481
LH+ P + S +P S P + + P P HPS +PC
Sbjct: 463 LHSHP-SPSQPSPVSHPPAQALLHTSHPSPATHPSPKPC 500
>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
Length = 534
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 337 YSAHFIKKRSPQWPVSYIA--PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPA 510
Y H+I K P+ P+ A PSS PN + TT +Q PI+ A +PA
Sbjct: 36 YRRHYIDKVRPR-PMDREAKRPSSAHNPNNCVQVS-------TTNSIQKTPISLNAFVPA 87
Query: 511 QLI*SRRGLPP 543
L+ + R L P
Sbjct: 88 LLLSNVRSLAP 98
>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 337 YSAHFIKKRSPQWPVSYIA--PSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPA 510
Y H+I K P+ P+ A PSS PN + TT +Q PI+ A +PA
Sbjct: 36 YRRHYIDKVRPR-PMDREAKRPSSAHNPNNCVQVS-------TTNSIQKTPISLNAFVPA 87
Query: 511 QLI*SRRGLPP 543
L+ + R L P
Sbjct: 88 LLLSNVRSLAP 98
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 431 VALLEPLPTRHPSCRPCRSHR-----LHHFPRSSSDQEEVCPRAGDNLHRTYYLHRCSPR 595
+A L PL C+ R +H PRS++ V RA + ++ Y+H PR
Sbjct: 1634 LARLHPLQEHASPCKSMRGQEYTRVYVHTHPRSTTSPSTVLARACEVMNTRVYVH-THPR 1692
Query: 596 SFLSSSPA 619
+ S S A
Sbjct: 1693 TTTSPSTA 1700
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/80 (25%), Positives = 30/80 (37%)
Frame = +1
Query: 256 TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASG 435
TT G+T T+ I + + + + PV+ IAP S + P T +A
Sbjct: 1896 TTVAGETTAAPDTTMAPEITVAPETTVAPETTVVPETTSAPVTTIAPESTLVPETTVAPD 1955
Query: 436 PLGATTYTTPFVQTVPIAST 495
A T T+P T
Sbjct: 1956 TTVAPETTVVPETTMPPPKT 1975
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,684,002
Number of Sequences: 59808
Number of extensions: 452640
Number of successful extensions: 1508
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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