Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1442
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    31   0.68 
AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kin...    30   2.1  
AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase p...    30   2.1  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    29   3.6  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    29   3.6  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    29   3.6  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 385 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPAQ 513
           +I PSS I  N +    P     YTT    T P++ TA LP++
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELPSE 337


>AF194964-1|AAF28314.1|  632|Caenorhabditis elegans polo-like kinase
           2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 401 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 490
           PTS     SQ+   LL+P+P+R P+ R  CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285


>AC024201-9|AAF36014.1|  632|Caenorhabditis elegans Polo kinase
           protein 2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 401 PTSLPTPTSQV--ALLEPLPTRHPSCRP-CRSH 490
           PTS     SQ+   LL+P+P+R P+ R  CR H
Sbjct: 253 PTSASAAASQLIRVLLDPVPSRRPNARAVCRDH 285


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 469
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 469
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 469
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 383 ATSLLAPTSLPTPTSQVALLEPLPTRHPS 469
           +TS  AP++ P PTS   +LE  PT  P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 394 PSSYIT-PNTYIASGPLGATTYTTPFVQTVPIASTASLPAQLI 519
           PS+ +T PNT + S P  ATT TT  V T P ++  ++P+ ++
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTT--VVTTP-STVVTVPSTVV 385


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 349 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTAS 501
           F+K  +   P  ++ P   + P T   +  + A T T P   T P+++T +
Sbjct: 7   FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTT 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,759
Number of Sequences: 27780
Number of extensions: 323810
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)