Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1442
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14720.1 68416.m01861 mitogen-activated protein kinase, putat...    31   0.63 
At2g38440.1 68415.m04721 expressed protein                             30   1.9  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    29   4.5  
At1g60985.1 68414.m06865 expressed protein                             28   5.9  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   7.8  
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi...    28   7.8  

>At3g14720.1 68416.m01861 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK19) identical to mitogen-activated
           protein kinase (MAPK)(AtMPK19), PMID:12119167;
          Length = 586

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 334 AYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPAQ 513
           +Y A     RS   P   ++P+ Y  PNT       G    + P  Q VP    ++ PA+
Sbjct: 477 SYDARTSYYRSTVLPPQTVSPNCYFLPNTMNQEKRSGTEAASQPKPQFVPTQCNSAKPAE 536

Query: 514 L 516
           L
Sbjct: 537 L 537


>At2g38440.1 68415.m04721 expressed protein 
          Length = 1399

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 498 CSRCDRHGLHEGCRVGSGSKRATCDV 421
           CS+CD H  HEG    SG   AT D+
Sbjct: 808 CSKCDDHISHEGFHDLSGLDNATTDI 833


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 277 PLLASTSY--VSSIPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGAT 450
           P+L   S+  +S   + +  IA     IK+ +P W  + IA +   T N Y ++G + + 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 451 TY 456
            Y
Sbjct: 664 EY 665


>At1g60985.1 68414.m06865 expressed protein
          Length = 95

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 136 SLTLGLLYTVWLHSFHQEEVCCTCCVYRSCIILC 237
           SL L LL   W  S     + C C  Y +  ILC
Sbjct: 54  SLCLMLLAASWDESLRHSSISCNCTTYPNYKILC 87


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 488 HRLHHFPRSSSDQEEVCPRAGDNLHRTYYLHR 583
           HR HH   SSSD  E   +   + H  ++ HR
Sbjct: 11  HRKHHRSSSSSDDTEKASKRHKHRHHKHHHHR 42


>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 650

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 371 NGP*ATSLLAPTSLPTPTSQVALLEPLPTRHPSCR 475
           + P   SL A  SLP P        PLP RH  CR
Sbjct: 34  SSPSGRSLSAEVSLPNPLPADVRGYPLPRRHLICR 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,533
Number of Sequences: 28952
Number of extensions: 300228
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)