Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1440
         (302 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   1.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   3.8  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   5.0  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    19   8.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 114 KLVRCRCDKMKIKRPAVTANREKQIP 37
           K  R   D+ ++ RPA  ANR    P
Sbjct: 330 KRPRPNIDRHEVTRPAAPANRGNGFP 355


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 268 IPTITPDGGAFPR 230
           +P+I+P GG  P+
Sbjct: 201 LPSISPSGGFLPK 213


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 223 PSIVGRPRHQG*WSVWDR 276
           P ++G+P H+    VW++
Sbjct: 9   PEMMGKPIHEEVAQVWEQ 26


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 150 RGNFFVAHLELVKL 109
           R N+F+ HL L  L
Sbjct: 58  RMNYFITHLALADL 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,143
Number of Sequences: 336
Number of extensions: 1419
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)