Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1440
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 87 7e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 52 1e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 48 3e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 41 5e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 6e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 7e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.001
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 1.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 2.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 3.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 3.2
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 23 7.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 7.5
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 23 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 86.6 bits (205), Expect = 7e-19
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
Score = 31.5 bits (68), Expect = 0.028
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ G+MVGMGQKDSYV
Sbjct: 36 GRPRHHGIMVGMGQKDSYV 54
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 52.4 bits (120), Expect = 1e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 48.0 bits (109), Expect = 3e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 139 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 243
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 40.7 bits (91), Expect = 5e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 234
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 6e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 237
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 7e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 237
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 246
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 178 TYRSHCLLPTRQLLRRTS*ISEI 110
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 223 PSIVGRPRHQG*WSVWDRRTL 285
P+++ G WSVWD R+L
Sbjct: 350 PNLLATGADNGVWSVWDLRSL 370
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 153 QRGNFFVAHLEL-VKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 16
++ +F ++E V+++ CRC K P ++ + + CPC
Sbjct: 486 EKRKYFEINIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPC 532
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAG 198
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 3.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 181 KAGFAGDDAP-RAVFPSIVGRPRHQG*WSVWD 273
KA F+G R+ + VG+P H G S WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -1
Query: 233 TIEGNTARGASSPAKPALHIPEPLSTT 153
T EG A+ P P LHIP P TT
Sbjct: 31 TFEG--AQPQWEPPIPGLHIPPPPGTT 55
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 200 SPAKPALHIPEPLSTTNAATSSS 132
+P P PL+TTN TS+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 183 LAHTGAIVYYQRGNFFVAHLELVKLV 106
L TGAIV Y G FF + L+ +V
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLFIV 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,857
Number of Sequences: 5004
Number of extensions: 24202
Number of successful extensions: 68
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -