Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1440
(302 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 95 7e-21
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 95 7e-21
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 95 7e-21
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 95 7e-21
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 95 7e-21
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 95 7e-21
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 95 7e-21
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 95 7e-21
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 94 2e-20
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 94 2e-20
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 94 2e-20
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 93 5e-20
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 89 6e-19
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 57 3e-09
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 47 3e-06
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 46 7e-06
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 37 0.003
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 33 0.030
Z70752-4|CAA94756.2| 363|Caenorhabditis elegans Hypothetical pr... 29 0.85
U88172-6|AAB42261.1| 310|Caenorhabditis elegans Hypothetical pr... 29 0.85
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 1.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 1.5
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 27 2.0
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 27 2.0
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 27 2.0
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 27 2.0
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 27 2.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 26 6.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 26 6.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 26 6.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 26 6.0
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 26 6.0
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 26 6.0
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 26 6.0
L12018-9|AAA65465.2| 243|Caenorhabditis elegans Hypothetical pr... 25 7.9
AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin re... 25 7.9
AF100663-1|AAC68979.2| 173|Caenorhabditis elegans Hypothetical ... 25 7.9
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 95.5 bits (227), Expect = 7e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 94.3 bits (224), Expect = 2e-20
Identities = 41/43 (95%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 92.7 bits (220), Expect = 5e-20
Identities = 39/43 (90%), Positives = 43/43 (100%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 43
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 37 GRPRHQGVMVGMGQKDSYV 55
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 89.0 bits (211), Expect = 6e-19
Identities = 39/41 (95%), Positives = 41/41 (100%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 36 GRPRHQGVMVGMGQKDSYV 54
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +1
Query: 181 KAGFAGDDAPRAVFPSIVGRPRHQG 255
+AGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQG 29
Score = 32.3 bits (70), Expect = 0.069
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYV 290
G+ GVMVGMGQKDSYV
Sbjct: 23 GRPRHQGVMVGMGQKDSYV 41
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 46.8 bits (106), Expect = 3e-06
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 249
+V+DNGSG+ KAGFAG+ P+ F + VGRP++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKY 43
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 45.6 bits (103), Expect = 7e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 243
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 234
M ++ A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.5 bits (73), Expect = 0.030
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 234
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z70752-4|CAA94756.2| 363|Caenorhabditis elegans Hypothetical
protein F25B3.4 protein.
Length = 363
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 300 LISIHKSPSVPYRPSPLMAGPSHDRGKHCARSII 199
L+ + P+R + L G DRGKHC +I+
Sbjct: 121 LLRLFDKNGFPHRANYLFLGDYVDRGKHCLETIL 154
>U88172-6|AAB42261.1| 310|Caenorhabditis elegans Hypothetical
protein ZK354.9 protein.
Length = 310
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 300 LISIHKSPSVPYRPSPLMAGPSHDRGKHCARSII 199
L+ + P+R + L G DRGKHC +I+
Sbjct: 56 LLRLFDKNGFPHRANYLFLGDYVDRGKHCLETIL 89
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 294 SIHKSPSVPYRPSPLMAGPSHDRGK-HCARSIISCEAGLAH 175
S H S Y SP A + K CARSI SC AG ++
Sbjct: 464 SCHISSQCVYSKSPDAAEEYAEVAKMECARSICSCPAGFSY 504
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 181 KAGFAGDDAPRAVFPSIVGRPRHQG 255
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 206 ASSPAKPALHIPEPLSTTNAATSS 135
+SSPA P++ P P +T++ +TSS
Sbjct: 652 SSSPATPSISGPPPCATSSGSTSS 675
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 206 ASSPAKPALHIPEPLSTTNAATSS 135
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 206 ASSPAKPALHIPEPLSTTNAATSS 135
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 206 ASSPAKPALHIPEPLSTTNAATSS 135
+SSPA P++ P P +T++ +TSS
Sbjct: 653 SSSPATPSISGPPPCATSSGSTSS 676
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 258 MVGMGQKDSYV 290
MVGMGQKDSYV
Sbjct: 1 MVGMGQKDSYV 11
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 242 GLPTIEGNTARGASSPAKPALHIP 171
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 242 GLPTIEGNTARGASSPAKPALHIP 171
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 242 GLPTIEGNTARGASSPAKPALHIP 171
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 242 GLPTIEGNTARGASSPAKPALHIP 171
G P GN +GAS+P +P P
Sbjct: 123 GAPGAPGNPGKGASAPCEPVTQPP 146
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 71 GRLIFILSHLHLTNFTNSRCATKKLPR 151
GR I +L+ L+ + F N RC+ LP+
Sbjct: 1230 GRYIELLTQLNHSLFENGRCSNPALPQ 1256
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 266 TDHHP*WRGLPTIEG-NTARGASSPAKPALHIPEP 165
T +P RG + ++G SSPAKPA + +P
Sbjct: 1065 THKNPNLRGTAVVPAAGASQGGSSPAKPAAPVRKP 1099
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 266 TDHHP*WRGLPTIEG-NTARGASSPAKPALHIPEP 165
T +P RG + ++G SSPAKPA + +P
Sbjct: 304 THKNPNLRGTAVVPAAGASQGGSSPAKPAAPVRKP 338
>L12018-9|AAA65465.2| 243|Caenorhabditis elegans Hypothetical
protein F22B7.9 protein.
Length = 243
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 272 SHTDHHP*WRGLPTI 228
SH DHH W G+ TI
Sbjct: 51 SHQDHHDDWEGVNTI 65
>AF106592-1|AAK21365.2| 654|Caenorhabditis elegans Semaphorin
related protein 2 protein.
Length = 654
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 123 ELVKLVRCRCDKMKIKRPAVTANREKQIPIAG 28
E K+ C C+ K K+P T +K+I + G
Sbjct: 527 ESAKIPVCLCETEKQKKPCATEVIQKEIVLTG 558
>AF100663-1|AAC68979.2| 173|Caenorhabditis elegans Hypothetical
protein K08B4.2 protein.
Length = 173
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 43 LFLTVSSHCRAFNFHLVTPTSY*FH*FKMCDEEV 144
LFLTVS + AF F ++ T F + DEEV
Sbjct: 9 LFLTVSQYGSAFEFQVLDYTPVEFSFNQDIDEEV 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,523,653
Number of Sequences: 27780
Number of extensions: 152055
Number of successful extensions: 496
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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