Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1439
(563 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 54 5e-07
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein. 31 2.1
L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase ... 31 3.7
BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic ... 31 3.7
AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein. 31 3.7
X00497-2|CAA25193.1| 216|Homo sapiens protein ( Human mRNA for ... 30 4.9
X00497-1|CAA25192.1| 232|Homo sapiens protein ( Human mRNA for ... 30 4.9
M13560-1|AAA36033.1| 232|Homo sapiens cell surface glycoprotein... 30 4.9
K01144-1|AAA36304.1| 216|Homo sapiens class II antigen gamma ch... 30 4.9
BT019505-1|AAV38312.1| 232|Homo sapiens CD74 antigen (invariant... 30 4.9
BC018726-1|AAH18726.1| 232|Homo sapiens CD74 molecule, major hi... 30 4.9
U46116-1|AAC50439.1| 1445|Homo sapiens receptor tyrosine phospha... 30 6.5
L09247-1|AAA60224.1| 1445|Homo sapiens receptor-type protein tyr... 30 6.5
AB209871-1|BAD93108.1| 1530|Homo sapiens protein tyrosine phosph... 30 6.5
BC033209-1|AAH33209.1| 566|Homo sapiens C15orf42 protein protein. 29 8.5
AK074727-1|BAC11165.1| 653|Homo sapiens protein ( Homo sapiens ... 29 8.5
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 53.6 bits (123), Expect = 5e-07
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = -2
Query: 286 CGIQPTPQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTC 107
CG + + ++ + R V+YLG I Q S E+ + + EP + K +R FL
Sbjct: 359 CGYKVSKKKAQ--ICRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAA 416
Query: 106 SWFRKFIPNFSKVAEPLTRLTR--KNQIWIWGAEQ 8
+ R +IPNF+ +A+PL +T+ + + WG++Q
Sbjct: 417 GFCRLWIPNFAVLAKPLYEVTKWGDREPFEWGSQQ 451
>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
Length = 1819
Score = 31.5 bits (68), Expect = 2.1
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -2
Query: 226 YLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNFSKVAEPLTRL 47
YLG I +G + + ++ + ++ PSN L F+ R IP++ + PL L
Sbjct: 985 YLG--IPWDGKAPCQQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSL 1042
Query: 46 TRKNQIWIWGAE 11
++ W W E
Sbjct: 1043 LKQKPDWQWDQE 1054
>L07868-1|AAB59446.1| 1308|Homo sapiens receptor tyrosine kinase
protein.
Length = 1308
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 92 FSEPGACLQECPEVFKIT-RLFHFEHSAYLFRVGRNAFLCNDMPQ--VLDALSCENA 253
F++ GAC+ +CP+ F F EH+ + + AF P V+D+ SC A
Sbjct: 252 FNDSGACVTQCPQTFVYNPTTFQLEHN-FNAKYTYGAFCVKKCPHNFVVDSSSCVRA 307
>BC112199-1|AAI12200.1| 1308|Homo sapiens v-erb-a erythroblastic
leukemia viral oncogene homolog 4 (avian) protein.
Length = 1308
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 92 FSEPGACLQECPEVFKIT-RLFHFEHSAYLFRVGRNAFLCNDMPQ--VLDALSCENA 253
F++ GAC+ +CP+ F F EH+ + + AF P V+D+ SC A
Sbjct: 252 FNDSGACVTQCPQTFVYNPTTFQLEHN-FNAKYTYGAFCVKKCPHNFVVDSSSCVRA 307
>AC105921-1|AAY24303.1| 552|Homo sapiens unknown protein.
Length = 552
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 92 FSEPGACLQECPEVFKIT-RLFHFEHSAYLFRVGRNAFLCNDMPQ--VLDALSCENA 253
F++ GAC+ +CP+ F F EH+ + + AF P V+D+ SC A
Sbjct: 111 FNDSGACVTQCPQTFVYNPTTFQLEHN-FNAKYTYGAFCVKKCPHNFVVDSSSCVRA 166
>X00497-2|CAA25193.1| 216|Homo sapiens protein ( Human mRNA for
HLA-DR antigens associated invariant chain (p33). ).
Length = 216
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 111 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 162
>X00497-1|CAA25192.1| 232|Homo sapiens protein ( Human mRNA for
HLA-DR antigens associated invariant chain (p33). ).
Length = 232
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 127 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 178
>M13560-1|AAA36033.1| 232|Homo sapiens cell surface glycoprotein
protein.
Length = 232
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 127 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 178
>K01144-1|AAA36304.1| 216|Homo sapiens class II antigen gamma chain
protein.
Length = 216
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 111 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 162
>BT019505-1|AAV38312.1| 232|Homo sapiens CD74 antigen (invariant
polypeptide of major histocompatibility complex, class
protein.
Length = 232
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 127 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 178
>BC018726-1|AAH18726.1| 232|Homo sapiens CD74 molecule, major
histocompatibility complex, class II invariant chain
protein.
Length = 232
Score = 30.3 bits (65), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 268 PQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSW 101
P Q + + ++ H++ + DP KV L+ P NL+HL+ ++T W
Sbjct: 127 PMQNATKYGNMTEDHVMHLLQ----NADPLKVYPPLKGSFPENLRHLKNTMETIDW 178
>U46116-1|AAC50439.1| 1445|Homo sapiens receptor tyrosine
phosphatase gamma protein.
Length = 1445
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 319 STGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVIT--QEGVSTDPEKV 173
S+ PR S I P P E I +Q VK++G + + Q G S D E+V
Sbjct: 805 SSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEV 855
>L09247-1|AAA60224.1| 1445|Homo sapiens receptor-type protein
tyrosine phosphatase gamma protein.
Length = 1445
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 319 STGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVIT--QEGVSTDPEKV 173
S+ PR S I P P E I +Q VK++G + + Q G S D E+V
Sbjct: 805 SSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEV 855
>AB209871-1|BAD93108.1| 1530|Homo sapiens protein tyrosine
phosphatase, receptor type, G precursor variant protein.
Length = 1530
Score = 29.9 bits (64), Expect = 6.5
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 319 STGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVIT--QEGVSTDPEKV 173
S+ PR S I P P E I +Q VK++G + + Q G S D E+V
Sbjct: 890 SSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEV 940
>BC033209-1|AAH33209.1| 566|Homo sapiens C15orf42 protein protein.
Length = 566
Score = 29.5 bits (63), Expect = 8.5
Identities = 27/91 (29%), Positives = 38/91 (41%)
Frame = -2
Query: 322 PSTGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPS 143
PS GP + SC + T R+C + Q + L S P+ LEM + S
Sbjct: 167 PSCGPGSPLMPSCDVHCTTDGRQCQASAQ-LDNLPASAWHSTDSASPQTYEVELEM-QAS 224
Query: 142 NLKHLRTFLQTCSWFRKFIPNFSKVAEPLTR 50
L LR +K P+ S AEPL++
Sbjct: 225 GLPKLR--------IKKIDPSSSLEAEPLSK 247
>AK074727-1|BAC11165.1| 653|Homo sapiens protein ( Homo sapiens
cDNA FLJ90246 fis, clone NT2RM2001818, weakly similar to
SIALIDASE (EC 3.2.1.18). ).
Length = 653
Score = 29.5 bits (63), Expect = 8.5
Identities = 27/91 (29%), Positives = 38/91 (41%)
Frame = -2
Query: 322 PSTGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPS 143
PS GP + SC + T R+C + Q + L S P+ LEM + S
Sbjct: 254 PSCGPGSPLMPSCDVHCTTDGRQCQASAQ-LDNLPASAWHSTDSASPQTYEVELEM-QAS 311
Query: 142 NLKHLRTFLQTCSWFRKFIPNFSKVAEPLTR 50
L LR +K P+ S AEPL++
Sbjct: 312 GLPKLR--------IKKIDPSSSLEAEPLSK 334
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,631,450
Number of Sequences: 237096
Number of extensions: 1697541
Number of successful extensions: 7831
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7830
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -