Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1439
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 77 1e-14
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 77 1e-14
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 77 1e-14
U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical pr... 35 0.035
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 31 0.57
AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain famil... 30 1.0
AF024493-3|AAB70322.2| 319|Caenorhabditis elegans Hypothetical ... 29 3.1
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 28 4.0
U00049-7|AAC47054.1| 582|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z82283-4|CAB05286.1| 689|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81044-10|CAB02807.3| 368|Caenorhabditis elegans Hypothetical p... 27 7.0
Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical pr... 27 7.0
U58755-11|AAB00701.1| 247|Caenorhabditis elegans Hypothetical p... 27 7.0
AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical ... 27 7.0
Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical pr... 27 9.3
AC024863-2|AAP31420.1| 366|Caenorhabditis elegans Prion-like-(q... 27 9.3
AC024863-1|AAF60877.1| 481|Caenorhabditis elegans Prion-like-(q... 27 9.3
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = -2
Query: 256 ECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNF 77
+C A++ V+YLGH +T +GV T K + + P+N+K L++FL ++RKFI NF
Sbjct: 1216 KCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1275
Query: 76 SKVAEPLTRLTRKNQIWIWGAEQ 8
+++A LT L WIW EQ
Sbjct: 1276 AQIASSLTSLISAKVAWIWEKEQ 1298
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = -3
Query: 519 ECDKTXLPFVCPLGXFRFKRMPFGLRNAPATFQRLIDSLCSCAALQXVTILRXLDDLCII 340
E K F F + +PFGL +PA FQ ++ + L V +DDL I
Sbjct: 1130 EKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIG--DLLGVCAFVYVDDLLIA 1187
Query: 339 SQGYQRHLQDLETVFNRLAEFNLHL 265
S+ ++HLQD++ R+ + + L
Sbjct: 1188 SKDMEQHLQDVKEALTRIRKSGMKL 1212
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = -2
Query: 256 ECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNF 77
+C A++ V+YLGH +T +GV T K + + P+N+K L++FL ++RKFI NF
Sbjct: 1119 KCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1178
Query: 76 SKVAEPLTRLTRKNQIWIWGAEQ 8
+++A LT L WIW EQ
Sbjct: 1179 AQIASSLTSLISAKVAWIWEKEQ 1201
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = -3
Query: 519 ECDKTXLPFVCPLGXFRFKRMPFGLRNAPATFQRLIDSLCSCAALQXVTILRXLDDLCII 340
E K F F + +PFGL +PA FQ ++ + L V +DDL I
Sbjct: 1033 EKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIG--DLLGVCAFVYVDDLLIA 1090
Query: 339 SQGYQRHLQDLETVFNRLAEFNLHL 265
S+ ++HLQD++ R+ + + L
Sbjct: 1091 SKDMEQHLQDVKEALTRIRKSGMKL 1115
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = -2
Query: 256 ECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNF 77
+C A++ V+YLGH +T +GV T K + + P+N+K L++FL ++RKFI NF
Sbjct: 1130 KCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1189
Query: 76 SKVAEPLTRLTRKNQIWIWGAEQ 8
+++A LT L WIW EQ
Sbjct: 1190 AQIASSLTSLISAKVAWIWEKEQ 1212
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/85 (29%), Positives = 40/85 (47%)
Frame = -3
Query: 519 ECDKTXLPFVCPLGXFRFKRMPFGLRNAPATFQRLIDSLCSCAALQXVTILRXLDDLCII 340
E K F F + +PFGL +PA FQ ++ + L V +DDL I
Sbjct: 1044 EKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIG--DLLGVCAFVYVDDLLIA 1101
Query: 339 SQGYQRHLQDLETVFNRLAEFNLHL 265
S+ ++HLQD++ R+ + + L
Sbjct: 1102 SKDMEQHLQDVKEALTRIRKSGMKL 1126
>U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical
protein T16A1.8 protein.
Length = 368
Score = 35.1 bits (77), Expect = 0.035
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2
Query: 271 TPQQRECIFARQSVKYLGHVITQEGVSTDPEKVSAVLEMKEPSNL 137
TP + E + V+ ++++++G+ TDPEK+ AV + +P N+
Sbjct: 305 TPVRNEVEIGKVEVRT--YIVSKDGIQTDPEKIKAVSKFPQPKNV 347
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 283 GIQPTPQQRECIFARQSVKYLGHVITQEGVSTDPEK 176
G+ P P+ + AR++VKY G+V+ E V+ D +
Sbjct: 940 GLTPKPELQRNERARRAVKYYGNVVNSEDVTMDDSR 975
>AC024214-9|AAF36079.1| 790|Caenorhabditis elegans Calpain family
protein 6 protein.
Length = 790
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -2
Query: 289 SCGIQPTPQQRECIFARQSVKYLGHVITQEG---VSTDPEKVSAVLEMKEP 146
+C I P P+++E A V+ GH + G V TD EKV A+L ++ P
Sbjct: 347 ACSIDPDPREKEAQLANGLVR--GHAYSVTGVHTVETDKEKV-ALLRIRNP 394
>AF024493-3|AAB70322.2| 319|Caenorhabditis elegans Hypothetical
protein F23F1.3 protein.
Length = 319
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -2
Query: 115 QTCSWFRKFIPNFSKVAEPLTRLTRKNQIWIWGAEQVR 2
+T + FRKFI + K+ + + + R+N +W++ + V+
Sbjct: 142 ETFAKFRKFIDHNQKILKEIGFVVRQNTLWMFDEQLVK 179
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 150 SFISSTALTFSGSVETPSCVMTCPKYLTLCLAKM 251
++ S A+ + G +ET SC ++ +YL + L ++
Sbjct: 283 NWTSHQAIVYGGYIETASCALSVSQYLVIGLTRV 316
>U00049-7|AAC47054.1| 582|Caenorhabditis elegans Hypothetical
protein C18F10.7a protein.
Length = 582
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 482 WVPFVSKECRSDC 444
WVPF+S+ C SDC
Sbjct: 136 WVPFLSQACPSDC 148
>Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 278 NSARRLKTVSRSCRWRWYP*DIIHRSSKXLKIV 376
NS+ R TVSR +WR + DI + + + KI+
Sbjct: 293 NSSTRAVTVSRDGKWRIFDTDIRYEAGQDSKIL 325
>Z82283-4|CAB05286.1| 689|Caenorhabditis elegans Hypothetical
protein T23G4.4 protein.
Length = 689
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 145 SNLKHLRTFLQTCSWFRKFIPNFSK 71
++L+H RT+L+ S RK +PN K
Sbjct: 550 NDLEHDRTYLEMRSQLRKMLPNIKK 574
>Z81044-10|CAB02807.3| 368|Caenorhabditis elegans Hypothetical
protein C30H6.3 protein.
Length = 368
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +3
Query: 159 SSTALTFSGSVETPSCVMTCPK----YLTLCLAKM 251
+S A+TF+ + C +TCP Y LC AK+
Sbjct: 228 ASEAITFTTQFDASKCPVTCPTNWVYYSNLCYAKI 262
>Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 278 NSARRLKTVSRSCRWRWYP*DIIHRSSKXLKIV 376
NS+ R TVSR +WR + DI + + + KI+
Sbjct: 293 NSSTRAVTVSRDGKWRIFDTDIRYEAGQDSKIL 325
>Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 278 NSARRLKTVSRSCRWRWYP*DIIHRSSKXLKIV 376
NS+ R TVSR +WR + DI + + + KI+
Sbjct: 293 NSSTRAVTVSRDGKWRIFDTDIRYEAGQDSKIL 325
>U58755-11|AAB00701.1| 247|Caenorhabditis elegans Hypothetical
protein C34D4.4a protein.
Length = 247
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 51 RVRGSATLEKFGMNFRNQEHVCK 119
++ G+ EK+GM RN+ VCK
Sbjct: 6 KISGAFPREKYGMQVRNRRKVCK 28
>AC006638-7|AAK85485.2| 491|Caenorhabditis elegans Hypothetical
protein F41G4.5 protein.
Length = 491
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 312 DLETVFNRLAEFNLHLNRESAFSQDRASSTWGMSLHKKAFLPTLK 178
D + F RLA ++ NR SA + + TW + L + + PT++
Sbjct: 283 DDDKQFPRLAFYHYTNNRTSAPRANTRAPTWPVGLAAQTYTPTVR 327
>Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical
protein F52B11.1b protein.
Length = 389
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 205 QEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNFSKVAE 62
++G+ + VS ++EM++P + RT C K+IP+ E
Sbjct: 235 EDGMIETAKTVSELIEMEDPFGEEGCRTKKDACHKHHKWIPSLRGTIE 282
>Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical
protein F52B11.1a protein.
Length = 508
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 205 QEGVSTDPEKVSAVLEMKEPSNLKHLRTFLQTCSWFRKFIPNFSKVAE 62
++G+ + VS ++EM++P + RT C K+IP+ E
Sbjct: 354 EDGMIETAKTVSELIEMEDPFGEEGCRTKKDACHKHHKWIPSLRGTIE 401
>AC024863-2|AAP31420.1| 366|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform b protein.
Length = 366
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 138 RLLGSFIS-STALTFSGSVETPSCVMTC 218
+LLG+ +S S +++ SGS+ PSC +TC
Sbjct: 270 KLLGTSLSMSFSISCSGSLIGPSCDLTC 297
>AC024863-1|AAF60877.1| 481|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
isoform a protein.
Length = 481
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 138 RLLGSFIS-STALTFSGSVETPSCVMTC 218
+LLG+ +S S +++ SGS+ PSC +TC
Sbjct: 270 KLLGTSLSMSFSISCSGSLIGPSCDLTC 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,481
Number of Sequences: 27780
Number of extensions: 282587
Number of successful extensions: 912
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -