Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1439
(563 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.7
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 3.7
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 6.5
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 6.5
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 6.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.6
DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein. 21 8.6
DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450 monoo... 21 8.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 8.6
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 26 PNLVFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKIT 145
P+++ A +GF + + G+CL P +FK T
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKST 110
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + V W PF + C
Sbjct: 108 KSTCKMDVAWFPFDDQHC 125
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 26 PNLVFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKIT 145
P+++ A +GF + + G+CL P +FK T
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKST 110
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 108 KSTCKIDIAWFPFDDQHC 125
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 26 PNLVFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKIT 145
P+++ A +GF + + G+CL P +FK T
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKST 110
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 108 KSTCKIDITWFPFDDQHC 125
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 26 PNLVFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKIT 145
P+++ A +GF + + G+CL P +FK T
Sbjct: 71 PDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKST 110
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 108 KSTCKMDIAWFPFDDQHC 125
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.2 bits (45), Expect = 3.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 319 STGPRNSFQSSCGIQPTPQQRECIF 245
ST RN S+C + +P Q++ F
Sbjct: 338 STIVRNHLNSTCSVTNSPHQKKLRF 362
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 376 NYFKXLG*SVYNISRVPAPSTGP 308
NY K L ++ NI ++P P P
Sbjct: 107 NYNKKLYYNIINIEQIPVPVPVP 129
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 376 NYFKXLG*SVYNISRVPAPSTGP 308
NY K L ++ NI ++P P P
Sbjct: 107 NYNKKLYYNIINIEQIPVPVPVP 129
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 376 NYFKXLG*SVYNISRVPAPSTGP 308
NY K L ++ NI ++P P P
Sbjct: 327 NYNKKLYYNIINIEQIPVPVPVP 349
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 108 KSTCKIDITWFPFDDQHC 125
>DQ435330-1|ABD92645.1| 132|Apis mellifera OBP13 protein.
Length = 132
Score = 21.0 bits (42), Expect = 8.6
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +2
Query: 203 LCNDMPQVLDALSCENALSLLRCRLNS 283
L N+ + ++ SC+ + LL+C +++
Sbjct: 99 LVNNCKDITESNSCKKSSKLLQCFIDN 125
>DQ232888-1|ABB36783.1| 499|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 499
Score = 21.0 bits (42), Expect = 8.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 534 NSNVRECDKTXLPFVCPLGXF 472
N V C+KT +P+ G F
Sbjct: 464 NHKVEVCEKTIIPYEFDPGAF 484
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 176 KSTCKIDITWFPFDDQHC 193
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 176 KSTCKIDITWFPFDDQHC 193
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 8.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Frame = -1
Query: 509 RQXCLLSVRWVPFVSKEC 456
+ C + + W PF + C
Sbjct: 145 KSTCKIDITWFPFDDQRC 162
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,301
Number of Sequences: 438
Number of extensions: 3334
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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