Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1439
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55540.1 68418.m06919 expressed protein 30 1.2
At3g25960.1 68416.m03235 pyruvate kinase, putative similar to py... 30 1.2
At2g37130.1 68415.m04555 peroxidase 21 (PER21) (P21) (PRXR5) ide... 30 1.2
At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase... 29 2.1
At4g30600.1 68417.m04341 signal recognition particle receptor al... 29 2.8
At3g55650.1 68416.m06183 pyruvate kinase, putative simlar to pyr... 29 2.8
At5g38880.1 68418.m04702 expressed protein 28 3.7
At3g55810.1 68416.m06201 pyruvate kinase, putative similar to py... 28 3.7
At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138... 28 5.0
At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containi... 27 6.5
At4g07943.1 68417.m01271 hypothetical protein similar to At4g052... 27 6.5
At3g10450.1 68416.m01253 serine carboxypeptidase S10 family prot... 27 6.5
At1g73270.1 68414.m08479 serine carboxypeptidase S10 family prot... 27 6.5
At1g21210.1 68414.m02651 wall-associated kinase 4 27 6.5
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 27 8.7
At1g25380.1 68414.m03150 mitochondrial substrate carrier family ... 27 8.7
At1g21230.1 68414.m02653 wall-associated kinase, putative simila... 27 8.7
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 125 PEVFKITRLFHFEHSAYLFRVGRNAFLCNDMPQVLDALSCENA 253
P V K+T A L RV R LCND+ Q+L EN+
Sbjct: 686 PSVSKLTHHIRMTSKAILQRVPRVYQLCNDIVQLLSDWRSENS 728
>At3g25960.1 68416.m03235 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 497
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 194 NAFLCNDMPQVLDALSCENALSLLRCRL-NSA 286
+ LC+D L+ LSC+ L L+RCR NSA
Sbjct: 135 DVILCSDGTISLNVLSCDKYLGLVRCRCENSA 166
>At2g37130.1 68415.m04555 peroxidase 21 (PER21) (P21) (PRXR5)
identical to SP|Q42580 Peroxidase 21 precursor (EC
1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b)
{Arabidopsis thaliana}
Length = 327
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = -2
Query: 352 SVYNISRVPAPSTGPRNSFQSSCGIQPTPQQRECIFARQSVKYLGHVITQEGVSTDPEKV 173
++Y R P+P+ P N+ S + TP + ++ + + + G ++ + ++TDP
Sbjct: 224 ALYLKKRCPSPTPDP-NAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTA 282
Query: 172 SAVLEMKEPSNLKH 131
V +M +N H
Sbjct: 283 PFVAKMAADNNYFH 296
>At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase,
putative similar to mitogen-activated protein kinase
MEKK1 GP|1255448 [Arabidopsis thaliana]
Length = 608
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +2
Query: 35 VFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKITRLFHFEHSAYLFRVGRNAFLCND 214
V +RK G+G IW S L+ C + L E LFR+GR
Sbjct: 500 VINRKDSDGYGSPADIW---SLGCTVLEMCTGQIPYSDL---EPVQALFRIGRGT----- 548
Query: 215 MPQVLDALSCENALSLLRC-RLNSARR 292
+P+V D LS + L +L+C ++N R
Sbjct: 549 LPEVPDTLSLDARLFILKCLKVNPEER 575
>At4g30600.1 68417.m04341 signal recognition particle receptor alpha
subunit family protein similar to Signal recognition
particle receptor alpha subunit (SR-alpha) (Docking
protein alpha) (DP-alpha) (SP:P08240) [Homo sapiens};
similar to Signal recognition particle receptor alpha
subunit (SR-alpha) (Docking protein alpha) (DP-alpha)
(SP:P06625) [Canis familiaris}; contains Pfam PF04086:
Signal recognition particle, alpha subunit, N-terminal;
contains Pfam PF00448: SRP54-type protein, GTPase domain
Length = 634
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 76 SKVAEPLTRLTRKNQIW 26
SKVAEP + T+KN++W
Sbjct: 244 SKVAEPAKKATKKNRVW 260
>At3g55650.1 68416.m06183 pyruvate kinase, putative simlar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 510
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 194 NAFLCNDMPQVLDALSCENALSLLRCRL-NSA 286
+ LC+D L LSC+ + L+RCR NSA
Sbjct: 135 DVILCSDGTISLTVLSCDKSFGLVRCRCENSA 166
>At5g38880.1 68418.m04702 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 9 CSAPQIQIWFFLVRRVRGSATLEKFGMN 92
C I IW FL+ RV+ T+E+ N
Sbjct: 48 CRGNMIPIWNFLINRVKSEKTVERIRRN 75
>At3g55810.1 68416.m06201 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 492
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 194 NAFLCNDMPQVLDALSCENALSLLRCRLNSA 286
+ LC+D L LSC+ + L+RCR ++
Sbjct: 117 DVILCSDGTISLTVLSCDKSFGLVRCRCENS 147
>At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 519
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 20 PDPNLVFSRKACQGFGDFRKIWNEFSEPGACLQECPEVFKITRLFHFEHSAYLFRVGRNA 199
P+ + + + F D R I+NE G C EV I R F++S ++
Sbjct: 279 PEEQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGEL 338
Query: 200 F 202
F
Sbjct: 339 F 339
>At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 657
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 493 CLSVGXLSFQKNAVRIAQRASYLPTTH 413
C +G + AV+IAQ++ Y P+ H
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDH 317
>At4g07943.1 68417.m01271 hypothetical protein similar to At4g05290,
At3g42740, At5g35010, At5g36840, At3g43390, At2g14770,
At2g05560, At4g08880, At1g34730
Length = 213
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 81 FGMNFRNQEHVCKNVLRCLRLLGSFISST-ALTFS----GSVETPSCVMTC 218
+ + + +C+ VL ++ G+ + T A +FS G + TP C M C
Sbjct: 136 YALESEDTRDICEEVLEEIKKYGNTLKYTYAKSFSYPECGDIRTPDCAMMC 186
>At3g10450.1 68416.m01253 serine carboxypeptidase S10 family protein
similar to glucose acyltransferase GB:AAD01263 [Solanum
berthaultii]; also similar to serine carboxypeptidase I
GB:P37890 [Oryza sativa]
Length = 437
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 105 EHVCKNVLRCLRLLGSFISSTALTFSGSVETPSCVMTCP 221
E+V +CL+L+G + T + TP CV T P
Sbjct: 253 ENVDPRNTKCLKLVGEYQKCTKRINKALIITPECVDTSP 291
>At1g73270.1 68414.m08479 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase I precursor
(SP:P07519) [Hordeum vulgare], glucose acyltransferase
GB:AAD01263 [Solanum berthaultii]; contains Pfam
profile: PF00450 Serine carboxypeptidase;
Length = 441
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 105 EHVCKNVLRCLRLLGSFISSTALTFSGSVETPSCVMTCP 221
EHV CL+LL F T+ + + P C MT P
Sbjct: 257 EHVDPYNTECLKLLEEFNECTSKLYRSHILYPLCEMTNP 295
>At1g21210.1 68414.m02651 wall-associated kinase 4
Length = 738
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 239 SCENALSLLRCRLNSARRLKTVSRSCRWRWYP 334
+CEN L RC S L T + +C+ + P
Sbjct: 299 TCENKLGHFRCNCRSRYELNTTTNTCKPKGNP 330
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 173 YLFRVGRNAFLCNDMPQVLDALSCENALSLLRCRLNSARRLKTVSRSCRWRWY 331
Y F + C MP + +++ E+A ++RC + + L + + R RWY
Sbjct: 583 YAFSLPLGFHACGSMPAPVASIALEDAAGVVRCIILAV--LGIHNETIRERWY 633
>At1g25380.1 68414.m03150 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 363
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 495 FVCPLGXFRFKRMPFGLRNAPATFQR 418
FVCPL + + GL APA+ QR
Sbjct: 34 FVCPLDVIKTRLQVLGLPEAPASGQR 59
>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 733
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 230 DALSCENALSLLRCRLNSARRLKTVSRSC 316
D +CEN L C+ S L T + SC
Sbjct: 292 DTSTCENTLGSFHCQCPSGSDLNTTTMSC 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,396,130
Number of Sequences: 28952
Number of extensions: 253461
Number of successful extensions: 773
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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