Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1438
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 73 3e-14
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 72 4e-14
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 28 0.77
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 1.0
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 1.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.3
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 3.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 4.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 7.2
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 7.2
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 72.5 bits (170), Expect = 3e-14
Identities = 39/84 (46%), Positives = 53/84 (63%)
Frame = -3
Query: 327 KGITDKAIKN*AS*TKGSSNETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 148
K +T + + S KG ++ VR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 147 RRLGTHIRAKRKREELSNVLAQMR 76
+RLGT RAK K EEL++V+ R
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 72.1 bits (169), Expect = 4e-14
Identities = 39/84 (46%), Positives = 53/84 (63%)
Frame = -3
Query: 327 KGITDKAIKN*AS*TKGSSNETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 148
K +T + + S KG ++ VR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 147 RRLGTHIRAKRKREELSNVLAQMR 76
+RLGT RAK K EEL++V+ R
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSR 96
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.9 bits (59), Expect = 0.77
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 49 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 174
+V SL G L + A+FFT PL ++VCA + + + ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 113 SVKNLATCSLR*GRQPPRLITITI 42
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.5 bits (58), Expect = 1.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 231 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 76
++ HA ++ L+VSKD KRR+ THI + +R LS V Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = -2
Query: 241 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 140
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 243 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 112
++RE +G + K + ++ K ALKF+ R+L H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = -3
Query: 195 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 79
+LLK ++ + K K+RL +I K K+EE+++++A++
Sbjct: 75 QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 7.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 43 MVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSPLLILS 219
M + +GG + SEHV K F L V ++ ++ S + LK + S LL ++
Sbjct: 121 MELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSELLTIT 180
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 319 DTLAASGYFSCFVAFSQAYCDFKTRSHDFG 408
D A + S F AFSQ Y + +S+DFG
Sbjct: 319 DLRLACCFESHFFAFSQHYPRYLEQSNDFG 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,069
Number of Sequences: 5004
Number of extensions: 28307
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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