Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1438
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 115 2e-26
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 29 2.4
SB_52998| Best HMM Match : DUF827 (HMM E-Value=4.4) 29 2.4
SB_47731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_32316| Best HMM Match : Baculo_p24 (HMM E-Value=1.2) 29 2.4
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 29 2.4
SB_16430| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 28 3.1
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 3.1
SB_54890| Best HMM Match : XH (HMM E-Value=3.4) 28 4.2
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 27 7.3
SB_46242| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 115 bits (277), Expect = 2e-26
Identities = 61/103 (59%), Positives = 75/103 (72%)
Frame = -3
Query: 381 IAVGLRKGHKTTKISAGRKGITDKAIKN*AS*TKGSSNETLQVVRDLVREVVGHAQYEKR 202
+AVGL+KGHK TK K S KG+SN+ ++ VRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 201 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 73
MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 744 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-AGLKGLQSSHSKL 791
>SB_52998| Best HMM Match : DUF827 (HMM E-Value=4.4)
Length = 202
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 23 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-AGLKGLQSSHSKL 70
>SB_47731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 91 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLQSSHSKL 138
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 183 LILIKDLECQQKNSRKELIMEMNRKLDETKQDKVL-ADLKGLQSSHSKL 230
>SB_38811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 183 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLQSSHSKL 230
>SB_32316| Best HMM Match : Baculo_p24 (HMM E-Value=1.2)
Length = 341
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 183 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLQSSHSKL 230
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 159 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLQSSHSKL 206
>SB_16430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGLQ+ HSKL
Sbjct: 183 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLQSSHSKL 230
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = -3
Query: 282 KGSSNETLQVV-RDLVREV-VGHAQYEKRAMEL--LKVSKDKRALKFLKR--RLGTHIRA 121
K ET+QV+ +DL+R + + R+M L + S+ K A + + + R H
Sbjct: 66 KTQEPETIQVITKDLIRRLRIPEEDPSGRSMILDWSEFSRIKSASRVISKEEREAAHNEM 125
Query: 120 KRKREELSN 94
KRK+EEL N
Sbjct: 126 KRKKEELQN 134
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 180 SKDKRALKFLKRRLGTHIRAKRKREELSN 94
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_54890| Best HMM Match : XH (HMM E-Value=3.4)
Length = 209
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 270 NETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 91
+ ++ V+ L REV A+YEK ++E+L+ K A + + G + K EE+ V
Sbjct: 86 SHNMETVKRLTREVRIQAKYEK-SLEVLRYLK---AQGIKRTKSGIMLGLGEKEEEVIQV 141
Query: 90 LAQMR 76
L +R
Sbjct: 142 LHDLR 146
>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 304 QELGQLD*RVFKRNTPSCP*FSTRSCRTRSI*EEGYG 194
+EL +++ RV KR T + P TRSC R+ E YG
Sbjct: 210 KELTEVN-RVGKRGTTTNPTAYTRSCNNRNSSAESYG 245
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 243 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 91
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 282 KGSSNETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 109
+G + + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
>SB_708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 282 KGSSNETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR--RLGTHI 127
+G S + L + D V A+ E+RAME + +++ AL+ K+ LGT +
Sbjct: 67 EGMSEQELDIQADKVIREQKQAERERRAMEQQRKKEEREALRQGKKMQHLGTKL 120
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -3
Query: 237 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 103
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_22161| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 489
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/94 (21%), Positives = 36/94 (38%)
Frame = -3
Query: 282 KGSSNETLQVVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 103
K S E LQ + V + +R ME++++ + KR + + K KRE+
Sbjct: 30 KNSHLERLQEQNQRLEHEVQRYKERERHMEIVQLLEKKRPWAEYEEARKQFVDLKTKRED 89
Query: 102 LSNVLAQMRKXXXXXXXXXX*VINKLIYVSKKKK 1
L Q R+ ++ L + + K
Sbjct: 90 AKKQLDQCRRENAPMEQQLNAIVQHLCQLDRNMK 123
>SB_46242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 392 LVLKSQ*ACEK--ATKQLKYPLAARVSQTKPSRIRPARLKGLQTKHSKL 252
L+L C++ + K+L + ++ +TK ++ A LKGL + HSKL
Sbjct: 151 LILIKDLECQQKNSRKELIMEMDRKLDETKQDKVL-ADLKGLHSSHSKL 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,249
Number of Sequences: 59808
Number of extensions: 220365
Number of successful extensions: 621
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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