Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1438
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   101   2e-22
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    27   6.4  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  101 bits (242), Expect = 2e-22
 Identities = 52/103 (50%), Positives = 71/103 (68%)
 Frame = -3

Query: 381 IAVGLRKGHKTTKISAGRKGITDKAIKN*AS*TKGSSNETLQVVRDLVREVVGHAQYEKR 202
           +AVGL KGH  T++           +K   +  KG +++  ++VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 201 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 73
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+   RK
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 255 VVRDLVREVVGHAQYEKRAMELLKV 181
           V+RD + EV+G+ Q++K  +E+L V
Sbjct: 132 VIRDFLCEVIGNRQFKKYKLEILTV 156


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -3

Query: 279 GSSNETLQVVRDLVREVVGH---AQYEKRAMELLKVS-KDKRALKFLKRRLGTHIRAKRK 112
           GS    L++V ++    VG    A     A   L+ + K+K+ L+ L  RLG +I   +K
Sbjct: 42  GSGGRVLKMVTEMGSATVGGISPALSANAAKSFLEATDKEKKTLQGLNDRLGNYIDRVKK 101

Query: 111 REELSNVL 88
            EE +  L
Sbjct: 102 LEEQNRKL 109


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 243 LVREVVGHAQYEKRAMELLKV 181
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,756
Number of Sequences: 27780
Number of extensions: 161663
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)