Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1436
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    56   6e-07
UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep: Trans...    37   0.42 
UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2; Rhodob...    36   0.73 
UniRef50_Q3UY09 Cluster: Adult male olfactory brain cDNA, RIKEN ...    33   6.8  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = -2

Query: 399 RRPRHVLTDPSDPITFALDAFSSNTRS 319
           RRPRHVLTDPSDPIT ALD FSSNTRS
Sbjct: 914 RRPRHVLTDPSDPITLALDTFSSNTRS 940


>UniRef50_Q8ITJ9 Cluster: Transposase; n=7; Arthropoda|Rep:
           Transposase - Bombyx mori (Silk moth)
          Length = 346

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +3

Query: 396 AARTTKAANAVKARIGRSPDKKQKILSREMKISARTLSVL*NK 524
           + RT     AVKARI R+P +KQK+L+ +M +S  T+  + N+
Sbjct: 63  SVRTPAVIKAVKARIQRNPKRKQKLLALQMGLSRTTVKRVLNE 105


>UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2;
           Rhodobacteraceae|Rep: ComEC/Rec2-related protein -
           Jannaschia sp. (strain CCS1)
          Length = 706

 Score = 36.3 bits (80), Expect = 0.73
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +3

Query: 51  PEGLSSFTRTGGRAKAQPRGAGFANNCPSTSEGDLTTQE 167
           P GL   T   GRA ++PRG GF       ++GDL TQE
Sbjct: 540 PGGLVGLTTDQGRALSRPRGDGFVAGIWLENDGDLITQE 578


>UniRef50_Q3UY09 Cluster: Adult male olfactory brain cDNA, RIKEN
           full-length enriched library, clone:6430562O12
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: Adult male olfactory brain cDNA, RIKEN
           full-length enriched library, clone:6430562O12
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 133

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 89  SPTCPGETGKAFGPPVNYQS*KKKKKNG 6
           S   PG  G+A  PP+ YQ  KKKKK G
Sbjct: 65  SQQVPGWIGEATSPPICYQKKKKKKKRG 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,418,008
Number of Sequences: 1657284
Number of extensions: 10846550
Number of successful extensions: 22852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22849
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)