Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1436
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    24   1.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.0  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    23   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.7  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 LCPCYKTRPEARCLSLIYRTCPKSIF 579
           LC  +KT+   + L+L+    PKS F
Sbjct: 36  LCKKHKTKKPVQILALLQEIIPKSYF 61


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 502 LCPCYKTRPEARCLSLIYRTCPKSIF 579
           LC  +KT+   + L+L+    PKS F
Sbjct: 36  LCKKHKTKKPVQILALLQEIIPKSYF 61


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 143 GGARAVVSKSRPSWLSLCSPTCPGETGKAFGPPV 42
           GG R+  + S  + +  C    PG++G+ FGP +
Sbjct: 29  GGKRSKFAISENA-VKPCVSCGPGQSGQCFGPSI 61


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = -3

Query: 326 LGAGLGTPVTVLVELDKEFDVQPNHESAR 240
           +G+GL   + + V+   +FD++  ++++R
Sbjct: 781 IGSGLSAVIQISVQAPPQFDIKLRNQTSR 809


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 349 CKGYWI*RIRKDVSRA 396
           CKG++   +RKD+S A
Sbjct: 106 CKGFFKRTVRKDLSYA 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,522
Number of Sequences: 336
Number of extensions: 2509
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)