Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1436
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0681 - 35512161-35512753,35512882-35513380                       29   3.6  
02_01_0039 - 271926-273503                                             28   6.2  
01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     28   8.3  

>03_06_0681 - 35512161-35512753,35512882-35513380
          Length = 363

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 400 LELQRLLMLLKPELVEAPIRSKKSYREK*KLALGLCPCYKTRPEARCLSLI 552
           +EL  L +  K E V+  ++ + ++ +  KL +  CP   T PEA  LS++
Sbjct: 1   MELDDLDIFQKWEAVDGTLKEEVAFPQLDKLTINECPELTTLPEAPKLSVL 51


>02_01_0039 - 271926-273503
          Length = 525

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = -3

Query: 320 AGLGTPVTVLVELDKEFDVQPNHESAR*VSRRIFSAGRDSDPVVDSFANQLLLSC*VSFG 141
           AGLG P+++ VEL    ++Q     AR   +R+      +  +V++     L        
Sbjct: 175 AGLGKPLSIDVELQNTANLQAAMSLARSYEQRLEDDAVAAPRIVENKQRSALSFRSAPAP 234

Query: 140 GARAVVSKSRPSWLSLCSPTCPGETGKAF 54
                 + S  + ++  SPT PG TG  F
Sbjct: 235 SRVGSSTSSSAAIVASKSPTRPGTTGTRF 263


>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 160 VVRSPSEVLGQLLANPAPLG*AFARPPVLVKLE 62
           + R+ S +LG+LLA+P+PL      P +L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,652
Number of Sequences: 37544
Number of extensions: 306601
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)