Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1436
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59250.1 68418.m07425 sugar transporter family protein simila...    30   1.7  
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    29   3.0  
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At2g23450.2 68415.m02800 protein kinase family protein contains ...    27   9.1  
At2g23450.1 68415.m02799 protein kinase family protein contains ...    27   9.1  

>At5g59250.1 68418.m07425 sugar transporter family protein similar
           to D-xylose-H+ symporter from Lactobacillus brevis
           GI:2895856, sugar-porter family protein 2 [Arabidopsis
           thaliana] GI:14585701; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 558

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 505 CPCYKTRPEARCLSLIYRTC 564
           C C+K+RP++  LSL  RTC
Sbjct: 30  CSCFKSRPDSSYLSLKERTC 49


>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +1

Query: 55  KAFPVSPGQVGEQRLSQEGRDLLTTARAPPKET*QLKSN*FANESTTGSESRPAEKIRRE 234
           K FP    +  +Q+L+++    LTT  +P K   +++S    + +   SE    E+ +  
Sbjct: 151 KLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNN 210

Query: 235 TQRADSWL 258
            Q   +W+
Sbjct: 211 KQGLPAWI 218


>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 691

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 281 DKEFDVQPNHESAR*VSRRIFSAGRDSDPVVDSFANQLLLSC*VSFGGARAVVSKSRPSW 102
           DK+F   PNHE    V  R+  A R  + +      +LL       G A+   + +  + 
Sbjct: 33  DKKF-FNPNHEDGGVVVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNL 91

Query: 101 LSLCSPTCPGETGK 60
           + +CS T   E GK
Sbjct: 92  IQVCSQTRALEEGK 105


>At2g23450.2 68415.m02800 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 PCYKTRPEARCLSLIYRTCPKSIFTI 585
           PC +  PE R   L++R C  ++ TI
Sbjct: 261 PCQRALPECRGSKLVWRHCRSNLITI 286


>At2g23450.1 68415.m02799 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 708

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 508 PCYKTRPEARCLSLIYRTCPKSIFTI 585
           PC +  PE R   L++R C  ++ TI
Sbjct: 261 PCQRALPECRGSKLVWRHCRSNLITI 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,854,694
Number of Sequences: 28952
Number of extensions: 234941
Number of successful extensions: 460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)