Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1434
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz...    26   1.7  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   2.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    23   9.2  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    23   9.2  

>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 116 RCLPCLPISTYTKIYWGNNY 175
           +C+ C P+    K YW N Y
Sbjct: 15  KCIICPPVPKALKKYWNNRY 34


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 215 LYQCNGEPAG-RHHLLLNFLLNVSAASLVLNVIFP 316
           LYQ +   A  R H+L N L+++ ++S  L+ ++P
Sbjct: 169 LYQYDDPVASLRSHILFNALISILSSSSTLHKLYP 203


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 134  PIST-YTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLL 259
            P+ T + +IY  +    P  +GLD   S  + N E A R   L
Sbjct: 943  PLKTRFLEIYTASRVYLPTISGLDPLVSYVRRNAETAERSQAL 985


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 NYKSPPTAGLDGRASLYQCNG 232
           N +S PT+ ++G+AS    NG
Sbjct: 434 NNQSSPTSSINGKASSESANG 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,860
Number of Sequences: 5004
Number of extensions: 20164
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)