Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1434
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0088 + 22723308-22724480                                         29   1.2  
03_02_0411 + 8217324-8218172                                           27   2.8  
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782...    27   4.9  

>04_04_0088 + 22723308-22724480
          Length = 390

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 221 QCNGEPAGRHHLLLNFLLNVSAASLVLNVIFPVRS 325
           +C+G  AG       F++    A LV+ VIFP RS
Sbjct: 66  RCSGLTAGEFSKGPPFIIGADGAFLVIRVIFPCRS 100


>03_02_0411 + 8217324-8218172
          Length = 282

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 254 NGGGQPAHRCTDRVTRDRPDQRSGD 180
           +GGG  +HR   R TR+RP +  GD
Sbjct: 29  DGGGGASHRPRFRRTRERPRRGGGD 53


>10_05_0011 -
           7822847-7822880,7823653-7823754,7823859-7824106,
           7824195-7824240,7824368-7825984,7826673-7826797,
           7826915-7829083
          Length = 1446

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 182 PPTAGLDGRASLYQCNGEPAGRHHLLLNFLLNVSAASLVLNVIFPVRSSL 331
           PP  G DG   L   N       H+L  FL  V + + V++   P+RS +
Sbjct: 745 PPFRGYDGTL-LQNPNKIVQTSQHMLQQFLQKVDSTNSVVSSNMPIRSDI 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,739
Number of Sequences: 37544
Number of extensions: 164417
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)