Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1434
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)               28   2.2  
SB_19359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.9  
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)                 27   3.8  
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)          27   3.8  
SB_31948| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 27   3.8  
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)           27   5.0  
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)                  27   5.0  
SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              26   8.8  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.8  

>SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)
          Length = 344

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 YKSPPTAGLDGRASLYQCNGEP 238
           Y +PP AG +G  +L+ C G+P
Sbjct: 321 YCAPPKAGRNGPITLFLCKGKP 342


>SB_19359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 YKSPPTAGLDGRASLYQCNGEP 238
           Y +PP AG +G  +L+ C G+P
Sbjct: 61  YCAPPKAGRNGPITLFLCKGKP 82


>SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  RTAHLVVSGYRRPWTXXMPGAKPSRCLPCLPIS 142
           R  HL+ SG RRP    +  A+P  C+  L +S
Sbjct: 67  RGRHLMESGGRRPACPSLDVARPKVCMEMLSVS 99


>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  RTAHLVVSGYRRPWTXXMPGAKPSRCLPCLPIS 142
           R  HL+ SG RRP    +  A+P  C+  L +S
Sbjct: 284 RGRHLMESGGRRPACPSLDVARPKVCMEMLSVS 316


>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
          Length = 1246

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 34   GRLAY--GPPGGKWLPXPMDXXNARSKAKPLPTMPTNINLHK 153
            G LAY   PPG +  P P +    R     LPT+P N+   K
Sbjct: 1106 GLLAYRSAPPGKR--PNPYEILMGRKLRNKLPTVPENLRPRK 1145


>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
          Length = 417

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 110 PSRCLPCLPISTYTKIYWGNNYKSPPTAGLDGRASLYQC 226
           P+     +P+ T   I W NN +  P      R S +QC
Sbjct: 353 PTTTCALVPVGTINTIQWENNARQVPDPTDGQRPSQHQC 391


>SB_31948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 275 LKGNLTTNGGGQ-PAHRCTDRVTRDRPDQR 189
           ++G LT+  GG    H C+ RVT D+  QR
Sbjct: 44  IQGQLTSEYGGTLKKHFCSQRVTEDKCPQR 73


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 110  PSRCLPCLPISTYTKIYWGNNYKSPPTAGLDGRASLYQC 226
            P+     +P+ T   I W NN +  P      R S +QC
Sbjct: 1733 PATTCALVPVGTINTIQWENNARQVPDPTDGQRPSQHQC 1771


>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
          Length = 826

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 110 PSRCLPCLPISTYTKIYWGNNYKSPPTAGLDGRASLYQC 226
           P+     +P+ T   I W NN +  P      R S +QC
Sbjct: 762 PTTTCALVPVGTINTIQWENNARQVPGPTDGQRPSQHQC 800


>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
          Length = 458

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 179 SPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLNVSAASLV 298
           +PP A  +G+    +  G P   HH L  +    SA +LV
Sbjct: 218 APPLAEQEGQLIETEATGAPQKHHHTLNQYFATGSADALV 257


>SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 56  LVVSGYRRPWTXXMPGAKPSRCL-PCLPISTYTKIYWGNNYKSPPTAGLDGR 208
           + ++  RR       G  P RCL P      YT+++   +++ P TAG D R
Sbjct: 267 ITLASARRATLRCHRGKGPRRCLGPGTDPLLYTRVWQPCDHQRPQTAGKDLR 318


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 297  TREAAETFKRKFNNKWWRP 241
            T +A +   RK  NKWW P
Sbjct: 1859 TPKAKKGLSRKLQNKWWGP 1877


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 40  LAYGPPGGKWLPXPMDXXNARSKAKPLPTMPTNI 141
           L YGP   K+ P P     A    +P P  P  +
Sbjct: 537 LQYGPAPNKYRPAPQPYRPAPEPYRPAPFRPAQV 570


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 146 YTKIYWGNNYKSPPTAGLDG 205
           YT  YW N  +  P AGL G
Sbjct: 203 YTSQYWSNKIEFNPEAGLTG 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,418,448
Number of Sequences: 59808
Number of extensions: 175513
Number of successful extensions: 393
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)