Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1434
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    26   7.5  
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.     25   10.0 
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso...    25   10.0 
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso...    25   10.0 
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso...    25   10.0 
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso...    25   10.0 
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.     25   10.0 

>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 183 PRPLVWTVAR--HSISATVSRLAATICC 260
           PR LVW+VAR   SI+AT+  +  T  C
Sbjct: 287 PRGLVWSVAREIESIAATILTVNTTTHC 314


>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 266 NLTTNGGGQPAHRCTDRVTRDRPDQRSGDFCNYYPNIFLC 147
           N  TNG G+ AH     V+  +P + S  F  +    F C
Sbjct: 147 NGITNGNGEVAHENGAPVSAQKPQKSSTTFYEFSQTDFEC 186


>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
          Length = 4250

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2141 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2187


>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform b protein.
          Length = 4203

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2058 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2104


>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform a protein.
          Length = 4488

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2379 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2425


>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform d protein.
          Length = 4369

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2379 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2425


>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
            actin-binding)homolog protein 1, isoform c protein.
          Length = 4447

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2379 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2425


>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
          Length = 4219

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 134  PISTYTKIYWGNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
            P   Y K  W   +++    G +G+        EP+G  HL L +LLN
Sbjct: 2074 PEREYEKPQWVQGFENYENVG-EGQTVTLHGLVEPSGDPHLRLEWLLN 2120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,754,694
Number of Sequences: 27780
Number of extensions: 125400
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)