Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1434
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    27   2.4  
At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2 ...    27   4.1  

>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 131 LPISTYTKIYW---GNNYKSPPTAGLDGRASLYQCNGEPAGRHHLLLNFLLN 277
           LP+  Y +  W   G N +        G+   YQC+  P G + L   FL N
Sbjct: 184 LPMVAYERAVWFKLGQNEERMQLESDSGKTHYYQCHVAPDGSYRLKGYFLEN 235


>At4g16360.1 68417.m02478 5'-AMP-activated protein kinase beta-2
           subunit, putative similar to Swiss-Prot:Q9QZH4
           5'-AMP-activated protein kinase, beta-2 subunit (AMPK
           beta-2 chain) [Rattus norvegicus]
          Length = 259

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 55  PGGKWLPXPMDXXNARSKAKPLPTMPTNINLHKNILG**LQKSPDRWSGRSRVTLS 222
           P   W+  P       S  + +PTM T  +  K I    ++ S D W  RSR+  S
Sbjct: 51  PNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIA---VEGSWDNWKTRSRLQRS 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,434,411
Number of Sequences: 28952
Number of extensions: 118357
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)