Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1433
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     31   1.1  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     29   2.6  
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   3.4  
02_04_0109 + 19812544-19814474,19814574-19814607                       29   4.5  
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    29   4.5  
08_02_0602 + 19183549-19184919                                         28   7.8  

>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +2

Query: 266 SSQTILRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 442
           SS+  +RH + H+++ +  A P+  A P+  ++P++    P   +  S HHE +  H K
Sbjct: 209 SSRIAIRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 556 SVRKVEYTADDHHGXNAVVSNTAPA 630
           SV K++   DDHHG  AV +  +P+
Sbjct: 801 SVEKLDQDGDDHHGKEAVAAAASPS 825


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 314 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 472
           +AAA P  YA  +  AAP A +  P      S     EY H  Y F   +  G
Sbjct: 43  LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95


>02_04_0109 + 19812544-19814474,19814574-19814607
          Length = 654

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +1

Query: 523 HGEYTLVEADGSVRKVEYTADDHHGXNAVVSNTAPAYHVAHACPR 657
           HG Y   E    V K       HH  ++  S   PA H AH CP+
Sbjct: 203 HG-YARQEERAEVVKASSQETYHHRFSSQKSKEYPAGHTAHDCPQ 246


>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 59  CCRSPARGALLFGSSCLLSEHRPSRPATAPCHQI 160
           CC+  A  A + G S +  EH P   A  P H I
Sbjct: 182 CCKRQAAAAAVVGHSSIRDEHVPCPYAGPPAHLI 215


>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 302 ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 472
           A+  +AAA P   A  +  A     V +    +L+SA HE     YA+ + D A   ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254

Query: 473 HSGDNKFQHE 502
           H   ++ Q E
Sbjct: 255 HHNQDESQRE 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,025
Number of Sequences: 37544
Number of extensions: 228552
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)