Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1433
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_22444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.9  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   7.9  

>SB_32767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 296 PHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYD 448
           PHA  + A     HYA P + AAP +++     K     +       P YD
Sbjct: 622 PHAQVFFAGRGVHHYAIPQYTAAPSSEIAKIVKKEPTECNETSSVWRPWYD 672


>SB_22444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 502 VPHGDAVHGEYTLVE 546
           VPHGD  HG+ TLV+
Sbjct: 25  VPHGDVTHGDVTLVQ 39


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +2

Query: 344  SPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKFQHESRTATL 520
            SP+ Y   +A+   P   V+ S    +     +    YS+  G SG +KF  + RT  +
Sbjct: 3030 SPIEYRCELAENTTPRSVVVCSVRATDRDERGQQSVRYSILGG-SGKDKFVIDERTGEI 3087


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 614 LTTAXKPWWSSAVYSTLRTEPSASTRVYSPCTASP 510
           LTT+ +P  SS ++ T  T P  +T V S     P
Sbjct: 37  LTTSIQPQTSSPIFHTTSTRPQTTTTVGSTILTQP 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,965
Number of Sequences: 59808
Number of extensions: 241208
Number of successful extensions: 1008
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)