Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1433
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.0  
Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    28   6.9  
U64852-4|AAB04967.1|  192|Caenorhabditis elegans Galectin protei...    27   9.2  
AB038501-1|BAB11966.1|  192|Caenorhabditis elegans galectin LEC-...    27   9.2  

>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
 Frame = +2

Query: 26   NRSLERC------AGSECCRSPARGALLFGSSCLLSEHRPSRPATAPCHQ 157
            NRSL  C       G  C     + A  FGS C     +P  P T  C Q
Sbjct: 1816 NRSLPHCICPSGFTGDHCEEYLCKDACPFGSKCTYDITKPMDPITCSCEQ 1865


>Z70756-10|CAI46587.1|  228|Caenorhabditis elegans Hypothetical
           protein T06E4.12 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 412
           + AAAP   A+P    AP A ++AP   VL +A
Sbjct: 55  VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 281 LRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFA-Y 457
           L+H  P           +HY  P+  A  +  +I P++ + V  H E    HP YD+  Y
Sbjct: 118 LKHLDPKKAERWTLMYSLHYLFPI--AFQILMLIPPSNHMEV--HSETLQFHPDYDYTPY 173

Query: 458 SVADGHSGDNKFQHESRTATLCTASTLW 541
               G+S   K ++  +TA     +T +
Sbjct: 174 LGFGGYSLAQK-EYVEKTAMFLLVATFY 200


>U64852-4|AAB04967.1|  192|Caenorhabditis elegans Galectin protein
           10 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 329 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 484
           P+H++   H +    KV A  + + V+ HH  +Y H +Y +    A G  GD
Sbjct: 82  PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129


>AB038501-1|BAB11966.1|  192|Caenorhabditis elegans galectin LEC-10
           protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 329 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 484
           P+H++   H +    KV A  + + V+ HH  +Y H +Y +    A G  GD
Sbjct: 82  PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,712,471
Number of Sequences: 27780
Number of extensions: 164363
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)