Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1433
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   1.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.0  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 585 ISGVLNLAH*TVSFNQSVLAVHSVAVRDSCW 493
           + G+L LA   +  N  +L  HS+A R   W
Sbjct: 245 MDGILGLALGPIRNNDRILYFHSLASRVESW 275


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 497 HESRTATLCTASTLWLKLTVQC 562
           HE++  TLC A +L   +T+ C
Sbjct: 733 HETQITTLCVAISLSATVTLVC 754


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 497 HESRTATLCTASTLWLKLTVQC 562
           HE++  TLC A +L   +T+ C
Sbjct: 823 HETQITTLCVAISLSATVTLVC 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,832
Number of Sequences: 438
Number of extensions: 1739
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)