Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1432
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 89 3e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 89 5e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 6e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 6e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 53 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 8e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.44
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 29 0.58
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 5.4
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 25 5.4
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (420), Expect = 2e-44
Identities = 78/95 (82%), Positives = 82/95 (86%)
Frame = +1
Query: 229 GKAPPXGREXGMGQKDSYVGDEAXSKRXILTLKYPIEHGIXTNWDDMEKIWHHTFYNELR 408
G+ G GMGQKDSYVGDEA SKR ILTLKYPIEHGI NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 409 VAPEEHPVLLTEAPLNPKANREKMTXIMFETFNSP 513
VAPEEHP LLTEAPLNPK+NREKMT I+FETFN+P
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAP 130
Score = 75.4 bits (177), Expect = 5e-15
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +2
Query: 128 DQEVAALVVDNGSGXCKAGFAGDDAPXAVFPXXXGRPRHXGV 253
++E+AALV+DNGSG CKAGFAGDDAP AVFP GRPRH G+
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGI 43
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 89.4 bits (212), Expect = 3e-19
Identities = 37/78 (47%), Positives = 56/78 (71%)
Frame = +1
Query: 271 KDSYVGDEAXSKRXILTLKYPIEHGIXTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 450
KD VGDEA + R +L +KYP+E+GI ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 451 LNPKANREKMTXIMFETF 504
+NP ANREKM MFE +
Sbjct: 110 MNPVANREKMCETMFERY 127
Score = 39.1 bits (87), Expect = 4e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 134 EVAALVVDNGSGXCKAGFAGDDAPXAVFPXXXGRP 238
E A +V+DNG+G K G+A D+ P FP GRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 88.6 bits (210), Expect = 5e-19
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +1
Query: 268 QKDSYVGDEAXSKRXILTLKYPIEHGIXTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 444
QKD +VG EA + R +L ++ PIE GI NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 445 APLNPKANREKMTXIMFETFNSPPCTSPSKP 537
PL N+EK+ +ET N P + +P
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +2
Query: 146 LVVDNGSGXCKAGFAGDDAPXAVFPXXXGRPRHXGV 253
+ +DNGSG KAGFAGDD P +FP GR +H V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERV 47
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.0 bits (201), Expect = 6e-18
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 DSYVGDEAXSKRXI-LTLKYPIEHGIXTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 450
D ++G++A K +L YPI HG NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 451 LNPKANREKMTXIMFETFN 507
LNP NRE IMFE+FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 146 LVVDNGSGXCKAGFAGDDAPXAVFP 220
+++DNG+G K G+AG+DAP VFP
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFP 32
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.2 bits (127), Expect = 6e-09
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +1
Query: 250 REXGMGQKDSYVGDEAXSKRXILTL-KYPIEHGIXTNWDDMEKIWHHTFYNELRVAPEEH 426
R+ + + + VG++ + ++ + P E + +NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 427 PVLLTEAPLNPKANREKMTXIMFETFNSP 513
P+ +TE NP R MT ++FE +N+P
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAP 145
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 146 LVVDNGSGXCKAGFAGDDAPXAVFPXXXGRPR 241
LV+DNGS +AG+ G+ P VF R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 53.2 bits (122), Expect = 2e-08
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +1
Query: 316 LTLKYPIEHGIXTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 495
+ +K I +G NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 496 ETFNSP 513
E+ P
Sbjct: 123 ESLRCP 128
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 134 EVAALVVDNGSGXCKAGFAGDDAPXAVFPXXXG 232
EV+A+V+D GS + GF+G+D P V P G
Sbjct: 10 EVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 41.5 bits (93), Expect = 8e-05
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 271 KDSYVGDEAXSKRXI--LTLKYPIEHGIXTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 444
++ YV DE I + +K +GI +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 445 APLNPKANREKMTXIMFETFNSP 513
NP++ R+++ FE + P
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVP 131
Score = 33.5 bits (73), Expect = 0.020
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 131 QEVAALVVDNGSGXCKAGFAGDDAPXAVFPXXXG 232
+E+ +LV+D GS + G+AG+++P + P G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.1 bits (62), Expect = 0.44
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 391 FYNELRVAPEEHPVLLTE--APLNPKANREKMTXIMFETFNSP 513
+Y L E+HP+LLT+ A L P+ + ++ I ++ N+P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 28.7 bits (61), Expect = 0.58
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +1
Query: 331 PIEHGIXTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTXIMFE 498
PI+ G +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 499 TFNSPPCTSPSKP 537
P T +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 436 LTEAPLNPKANREKMTXIMFETFNSPPCTSPS 531
L L PK+N +M+ ++ T N P T+PS
Sbjct: 141 LDNGSLCPKSNHIRMSTLISFTCNRDPYTAPS 172
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -2
Query: 429 GVFLGGDTQLIVEGMMPNLLHVIPVSXDSVFDGVFEGQDTSFAXCL 292
GVF GD ++ PN VI D D F D SF+ L
Sbjct: 265 GVFTTGDICKVLRKEFPNKSDVIAEPVDITVDPSFFKLDNSFSKSL 310
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 146 LVVDNGSGXCKAGFAG 193
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 433 LLTEAPLNPKANREKMTXIMFETFN 507
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,557
Number of Sequences: 5004
Number of extensions: 38235
Number of successful extensions: 85
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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