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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1430
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    40   4e-04
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    35   0.014
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   2.7  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   2.7  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   4.7  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   6.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.3  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   6.3  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +1

Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681
           QE  +E +++AL    P    VIR  K+  + I A    P D+V + +GD++PAD+R
Sbjct: 101 QEYRSEQSLKALNNLVPHYCNVIRSGKT--EHIVASKLVPGDLVILQIGDRVPADLR 155


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681
           QE  AE  +++L+     M  V R  K+    I +    P DVV +  GD +PAD+R
Sbjct: 104 QEYKAEKTMDSLRTLASPMAHVTRSSKTDA--IDSHLLVPGDVVVLKTGDVVPADLR 158



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 257 GLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQ 358
           GL+ ++ +    +YG N L  + G S W+++L Q
Sbjct: 29  GLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQ 62


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 288 WFLFIWSGLRPCLGLCQNILRLLPRISCER 199
           W L++W   RP  G   +   +LP+++ E+
Sbjct: 161 WDLYVWLPFRPLQGFLLDCQTVLPKVAVEK 190


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 180 SNSTMEDAHTKSVEEVLK--YFGTDPDKALVQTK*KG 284
           S+ST+ED       +V +  YFG+DP +++V    KG
Sbjct: 58  SDSTLEDVEGSEWADVSRGRYFGSDPSESIVCHNCKG 94


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 311 LPTEEGKSIWQLVLEQFDD 367
           +PT +GK+I+++ LE FDD
Sbjct: 110 VPTIDGKNIFEIDLESFDD 128


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 677 MSAGILSPTDTSTTSRGQFPWARIFCTPDLSPLMTLP 567
           +   +LSP  + T+S  + P  R  CT ++  L  +P
Sbjct: 472 LQTDLLSPLPSPTSSNSRLPRVRSACTLNVQELSKIP 508


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 510 PTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSN 358
           P P   + I+IS    G+  A+     +   ++TN  +   S+I  K S+N
Sbjct: 84  PPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEISHKSSNN 134


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = +2

Query: 404 SFVLALFEEHEDAFS-AFVEPFVILLILIANAVVGVGRKETPNLPSKL*KNTNLKWVKS* 580
           ++  A+  +  D  S A VEP V +L  IA+  +  G            K+T+++ V+  
Sbjct: 609 NYCCAVTSKSYDTISLAIVEPIVAVLAKIASTNIAAGSL----------KDTSVRLVEGV 658

Query: 581 EETNLEYKKSVPKEIVPGTL-LKCPLVTRSLLTFALIK 691
            +    Y+K     + PG L L   LV   +L  A++K
Sbjct: 659 VKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLK 696


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 517 RNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPA 672
           +N E  +        E+G + +G   G++ +   G    DVV V V + + A
Sbjct: 295 KNFEERVSQFAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEA 346


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 665 ILSPTDTSTTSRGQFPWARIFCT 597
           I+ PTDT+  + G++P +++ C+
Sbjct: 131 IIDPTDTNADNVGRYPVSKLSCS 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,546
Number of Sequences: 5004
Number of extensions: 55224
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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