BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1430 (724 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 40 4e-04 SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 35 0.014 SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 27 2.1 SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 2.7 SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 2.7 SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 4.7 SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 6.3 SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 6.3 SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 6.3 SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 6.3 >SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 899 Score = 39.9 bits (89), Expect = 4e-04 Identities = 21/57 (36%), Positives = 33/57 (57%) Frame = +1 Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681 QE +E +++AL P VIR K+ + I A P D+V + +GD++PAD+R Sbjct: 101 QEYRSEQSLKALNNLVPHYCNVIRSGKT--EHIVASKLVPGDLVILQIGDRVPADLR 155 >SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1037 Score = 34.7 bits (76), Expect = 0.014 Identities = 20/57 (35%), Positives = 29/57 (50%) Frame = +1 Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681 QE AE +++L+ M V R K+ I + P DVV + GD +PAD+R Sbjct: 104 QEYKAEKTMDSLRTLASPMAHVTRSSKTDA--IDSHLLVPGDVVVLKTGDVVPADLR 158 Score = 30.3 bits (65), Expect = 0.29 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = +2 Query: 257 GLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQ 358 GL+ ++ + +YG N L + G S W+++L Q Sbjct: 29 GLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQ 62 >SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 322 Score = 27.5 bits (58), Expect = 2.1 Identities = 9/30 (30%), Positives = 17/30 (56%) Frame = -2 Query: 288 WFLFIWSGLRPCLGLCQNILRLLPRISCER 199 W L++W RP G + +LP+++ E+ Sbjct: 161 WDLYVWLPFRPLQGFLLDCQTVLPKVAVEK 190 >SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schizosaccharomyces pombe|chr 2|||Manual Length = 313 Score = 27.1 bits (57), Expect = 2.7 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +3 Query: 180 SNSTMEDAHTKSVEEVLK--YFGTDPDKALVQTK*KG 284 S+ST+ED +V + YFG+DP +++V KG Sbjct: 58 SDSTLEDVEGSEWADVSRGRYFGSDPSESIVCHNCKG 94 >SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog |Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 27.1 bits (57), Expect = 2.7 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +2 Query: 311 LPTEEGKSIWQLVLEQFDD 367 +PT +GK+I+++ LE FDD Sbjct: 110 VPTIDGKNIFEIDLESFDD 128 >SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 594 Score = 26.2 bits (55), Expect = 4.7 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = -3 Query: 677 MSAGILSPTDTSTTSRGQFPWARIFCTPDLSPLMTLP 567 + +LSP + T+S + P R CT ++ L +P Sbjct: 472 LQTDLLSPLPSPTSSNSRLPRVRSACTLNVQELSKIP 508 >SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 341 Score = 25.8 bits (54), Expect = 6.3 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -2 Query: 510 PTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSN 358 P P + I+IS G+ A+ + ++TN + S+I K S+N Sbjct: 84 PPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEISHKSSNN 134 >SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 891 Score = 25.8 bits (54), Expect = 6.3 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Frame = +2 Query: 404 SFVLALFEEHEDAFS-AFVEPFVILLILIANAVVGVGRKETPNLPSKL*KNTNLKWVKS* 580 ++ A+ + D S A VEP V +L IA+ + G K+T+++ V+ Sbjct: 609 NYCCAVTSKSYDTISLAIVEPIVAVLAKIASTNIAAGSL----------KDTSVRLVEGV 658 Query: 581 EETNLEYKKSVPKEIVPGTL-LKCPLVTRSLLTFALIK 691 + Y+K + PG L L LV +L A++K Sbjct: 659 VKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLK 696 >SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 25.8 bits (54), Expect = 6.3 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 517 RNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPA 672 +N E + E+G + +G G++ + G DVV V V + + A Sbjct: 295 KNFEERVSQFAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEA 346 >SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 25.8 bits (54), Expect = 6.3 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = -3 Query: 665 ILSPTDTSTTSRGQFPWARIFCT 597 I+ PTDT+ + G++P +++ C+ Sbjct: 131 IIDPTDTNADNVGRYPVSKLSCS 153 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,801,546 Number of Sequences: 5004 Number of extensions: 55224 Number of successful extensions: 145 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 145 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 339215786 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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