Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1430
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 40 4e-04
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 35 0.014
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 2.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 27 2.7
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 4.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 6.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 6.3
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 6.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 6.3
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681
QE +E +++AL P VIR K+ + I A P D+V + +GD++PAD+R
Sbjct: 101 QEYRSEQSLKALNNLVPHYCNVIRSGKT--EHIVASKLVPGDLVILQIGDRVPADLR 155
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 34.7 bits (76), Expect = 0.014
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 511 QERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPADIR 681
QE AE +++L+ M V R K+ I + P DVV + GD +PAD+R
Sbjct: 104 QEYKAEKTMDSLRTLASPMAHVTRSSKTDA--IDSHLLVPGDVVVLKTGDVVPADLR 158
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 257 GLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQ 358
GL+ ++ + +YG N L + G S W+++L Q
Sbjct: 29 GLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQ 62
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 288 WFLFIWSGLRPCLGLCQNILRLLPRISCER 199
W L++W RP G + +LP+++ E+
Sbjct: 161 WDLYVWLPFRPLQGFLLDCQTVLPKVAVEK 190
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 180 SNSTMEDAHTKSVEEVLK--YFGTDPDKALVQTK*KG 284
S+ST+ED +V + YFG+DP +++V KG
Sbjct: 58 SDSTLEDVEGSEWADVSRGRYFGSDPSESIVCHNCKG 94
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 311 LPTEEGKSIWQLVLEQFDD 367
+PT +GK+I+++ LE FDD
Sbjct: 110 VPTIDGKNIFEIDLESFDD 128
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 677 MSAGILSPTDTSTTSRGQFPWARIFCTPDLSPLMTLP 567
+ +LSP + T+S + P R CT ++ L +P
Sbjct: 472 LQTDLLSPLPSPTSSNSRLPRVRSACTLNVQELSKIP 508
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 510 PTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSN 358
P P + I+IS G+ A+ + ++TN + S+I K S+N
Sbjct: 84 PPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEISHKSSNN 134
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 6.3
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +2
Query: 404 SFVLALFEEHEDAFS-AFVEPFVILLILIANAVVGVGRKETPNLPSKL*KNTNLKWVKS* 580
++ A+ + D S A VEP V +L IA+ + G K+T+++ V+
Sbjct: 609 NYCCAVTSKSYDTISLAIVEPIVAVLAKIASTNIAAGSL----------KDTSVRLVEGV 658
Query: 581 EETNLEYKKSVPKEIVPGTL-LKCPLVTRSLLTFALIK 691
+ Y+K + PG L L LV +L A++K
Sbjct: 659 VKILSSYRKVAANRLTPGQLVLPKNLVLLPILILAVLK 696
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 517 RNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAQGNCPRDVVEVSVGDKIPA 672
+N E + E+G + +G G++ + G DVV V V + + A
Sbjct: 295 KNFEERVSQFAISSQEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEA 346
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -3
Query: 665 ILSPTDTSTTSRGQFPWARIFCT 597
I+ PTDT+ + G++P +++ C+
Sbjct: 131 IIDPTDTNADNVGRYPVSKLSCS 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,546
Number of Sequences: 5004
Number of extensions: 55224
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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