Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1430
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.14 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 407 FVLALFEEHEDAFSAFVEPFVILLILIAN 493
           +V+ L +EH+DAF   V  F IL  +  N
Sbjct: 467 YVIILDDEHDDAFIGIVNQFHILQFITKN 495


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 453 KAENASSCSSNKANTNEIIAANSKILTKRSSNCSKTN--CH 337
           K E  S    NK+  N  + ++S +   R +NC+     CH
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCH 58


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 251 RQGLSPDQIKRNQEKYGPNELPTEEGKSIWQ 343
           R+    ++ ++ +E+Y P ELP +E KS+++
Sbjct: 138 REDNDEEEAQKPKEQYIPPELPNDE-KSLFE 167


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 234 ILRLLPRISCERPPWWNYYVAVSSRSYLNT*EGQF 130
           +L +L  ++  RP WW ++ A S  +     EG+F
Sbjct: 15  LLTILIFVTSHRPAWW-FWTATSHEASAPA-EGKF 47


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 620 EIVPGTLLKCPLVTRSLLTFALIKI 694
           EI+P T L  PL+ + LL F +I +
Sbjct: 286 EIIPSTSLALPLLGKYLL-FTMILV 309


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 598 VQKIRAQGNCPRDVVEVSVGDKIPADIRPYQNLLPHNPVSIP 723
           V + +A+GN   D++ V        D+   + +LP+  +  P
Sbjct: 22  VVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNLVFP 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,018
Number of Sequences: 438
Number of extensions: 3902
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)