Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1428
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    29   0.58 
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    29   0.58 
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    29   0.58 
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   1.8  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    26   3.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   5.4  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 169 VKFRVQILLNKKNYTEHYNMLDNI 240
           ++F ++  LN KNYTEH+  + N+
Sbjct: 470 LRFELEQPLNSKNYTEHHARVSNV 493


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 334 QENDKKFIKKTF--IKYENSYHKSKKNRFIFTMLYYQAYCNVRYN 206
           Q+NDK   +KT   +K   S    KKN+++  ML Y A+    YN
Sbjct: 170 QKNDKYREQKTQRNLKLSESDMLDKKNKYLLRMLVYNAHKQKFYN 214


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 337 LQENDKKFIK-KTFIKYENSYHKSK 266
           L+E DK F K K FI+Y N  HK K
Sbjct: 262 LEERDKYFSKLKMFIEYSNIVHKKK 286


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 337 LQENDKKFIKKTFIKYENSYHK 272
           L E D+ F  +TF KY++ YHK
Sbjct: 577 LNEADRAFAIETFEKYKHFYHK 598


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 526 FYVCLYSD--HLMSDVFQLHSMLLE 458
           +Y+C + D  H+ + +F+LH +L+E
Sbjct: 155 YYLCKFKDQEHIYTLIFKLHKLLIE 179


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 331  ENDKKFIKKTFIKYENSYHKSKKNRFIFTM 242
            +ND  ++    + Y  ++H S  NRF+F++
Sbjct: 1443 DNDVSYLDGVEMNYLYAFHFSISNRFVFSL 1472


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 340 WLQENDKKFIKKTFIKYENSYHKSKKNRFIFTML 239
           WL++ +     K F K    Y    K+RF+FTML
Sbjct: 458 WLKQKNSD--GKLFQKLIKKYILENKSRFVFTML 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,364
Number of Sequences: 5004
Number of extensions: 35350
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)