Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1427
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    43   4e-05
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    38   0.002
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    34   0.018
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   2.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   4.7  

>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
 Frame = +3

Query: 252 RQIKRNQEKYGPNELPTEEGKSIWQLVLEQF-DDLLVKXXXXXXXXSFVLALFEEHEDAF 428
           ++I R  + +G N+L  E+ +++    L+QF  D L+         S  L   +   DA 
Sbjct: 29  QEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLILLLFASSAISVTLGNID---DAI 85

Query: 429 SAFVEPFVILLILIANAVVGVWQERNANLPSKL*KNTNLKWVKS*EETNLEYKKSVPRKL 608
           S       I L ++    VG  QE  +    K   N    +         E+   V  KL
Sbjct: 86  S-------IALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEH--IVASKL 136

Query: 609 XPGTLFEVSVGDKIPADIRLIKIYSTHNPIDQSILT 716
            PG L  + +GD++PAD+R+++  +T   ID+S LT
Sbjct: 137 VPGDLVILQIGDRVPADLRIVE--ATELEIDESNLT 170


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 35/147 (23%), Positives = 61/147 (41%)
 Frame = +3

Query: 276 KYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXXXXXSFVLALFEEHEDAFSAFVEPFVI 455
           +YG N L  + G S W+++L Q  + +          SF            + ++E  VI
Sbjct: 41  EYGENRLEADSGVSAWKVLLRQVLNAMCVVLILAAALSF----------GTTDWIEGGVI 90

Query: 456 LLILIANAVVGVWQERNANLPSKL*KNTNLKWVKS*EETNLEYKKSVPRKLXPGTLFEVS 635
             I++ N  VG  QE  A       +            +  +   S    L PG +  + 
Sbjct: 91  SAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDS--HLLVPGDVVVLK 148

Query: 636 VGDKIPADIRLIKIYSTHNPIDQSILT 716
            GD +PAD+RL++  + +   D+++LT
Sbjct: 149 TGDVVPADLRLVE--TVNFETDEALLT 173


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
 Frame = +3

Query: 255 QIKRNQEKYGPNELPTEEGKSIW---QLVLEQFDDLLVKXXXXXXXXSFVLALFEEHEDA 425
           ++     KYG  E   EE K  +   Q+  E+ +++            FV+ L       
Sbjct: 164 ELLETDPKYGLTESEVEERKKKYGLNQMKEEKTNNIKKFLSFFVGPIQFVMELAAALAAG 223

Query: 426 FSAFVEPFVILLILIANAVVGVWQERNA-NLPSKL*KNTNLKWVKS*EETNLEYKKSVPR 602
              +V+  VI  +L+ NA VG  QE  A ++  +L K   LK     +    E + S   
Sbjct: 224 LRDWVDFGVICALLLLNATVGFVQEYQAGSIVDELKKTMALKASVLRDGRVKEIEAS--- 280

Query: 603 KLXPGTLFEVSVGDKIPADIRLIKIYSTHNPIDQSILT 716
           ++ PG +  +  G   PAD RLI        +DQS +T
Sbjct: 281 EIVPGDILHLDEGTICPADGRLI-TKDCFLQVDQSAIT 317


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 500 KKRESAIEALKEYEPEMGKVIRGDKSGVQKIRAKE 604
           KKRE A + LKE E  M K+   D+SG +++   E
Sbjct: 387 KKRELAQQQLKEQELLMQKIKETDRSGNKRLMLLE 421


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 294 LPTEEGKSIWQLVLEQFDD 350
           +PT +GK+I+++ LE FDD
Sbjct: 110 VPTIDGKNIFEIDLESFDD 128


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 275 FLVPFYLSGLRPLSGSVPKYFKTSSTDFV*ASSMVE--LLCCRQFKKLF 135
           FL  F L+G RP+ G++ KYF+++  D   A   +    L    F+K+F
Sbjct: 80  FLENFELTG-RPVVGTIFKYFQSNLLDLAKADLAMSSMFLLAFPFQKIF 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,879
Number of Sequences: 5004
Number of extensions: 52370
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)