Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1427
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   7e-09
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   9e-04
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   31   0.71 
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                30   1.6  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   2.2  
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     29   5.0  
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   28   6.6  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)              28   8.7  
SB_54251| Best HMM Match : rve (HMM E-Value=0.032)                     28   8.7  
SB_49099| Best HMM Match : rve (HMM E-Value=2e-08)                     28   8.7  
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)              28   8.7  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +3

Query: 393 VLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERN 506
           VLALFEE ED  +AFVEP VIL+ILI NA++GVWQ  N
Sbjct: 191 VLALFEEGEDQTTAFVEPIVILVILILNAIIGVWQGTN 228


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
 Frame = +3

Query: 258 IKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXXXXXSFVLALFEEHE----DA 425
           I+  +  +GPN +P +  K+ W+ +++   D  +         S +L +F   E    +A
Sbjct: 78  IENRKRVFGPNVIPPKPPKTFWEFLVDACKDTTLIILTVAAVVSLLLGIFAPEECGGSEA 137

Query: 426 FSAFVEPFVIL----LILIANAVVGVWQERN-ANLPSKL*KNTNLKWVKS*EETNLEYKK 590
            + +++ F IL    ++ +  AV    +E+    L SK+        ++     N + K+
Sbjct: 138 NTGWIDGFAILIAVCIVALVTAVNDYQKEQQFRGLQSKIELEHKFTVIR-----NGDAKE 192

Query: 591 SVPRKLXPGTLFEVSVGDKIPADIRLIKIYSTHNPIDQSILT 716
            +  ++  G L ++  GD +PAD   + + S    +D+S LT
Sbjct: 193 ILNSEIVVGDLCQIKYGDLLPAD--GVVVQSNDLKVDESSLT 232


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +2

Query: 476 RCSRSMA-GKKRESAIEALKEYE-PEMGKVIRGDKSGVQKIRAK 601
           +C    A GKK +S  ++ K  + P++ KVIRG K+G +K++ K
Sbjct: 690 KCINPQAPGKKVKSKAKSSKASKTPKLSKVIRGPKAGKEKVKKK 733


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 184 AHTKSVEEVLKYFGTDPDKGLSPDK 258
           A   +VEEVLK F TD  +GLS D+
Sbjct: 37  ASAMAVEEVLKQFNTDQSRGLSNDE 61


>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 543

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 615 GTLFEVSVGDKIPADIRLIKIYSTHNPIDQSILT 716
           G +  V++GD++PADIR+I+  S    +D S LT
Sbjct: 155 GDIIFVAIGDRVPADIRVIE--SKGFKVDNSSLT 186


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -1

Query: 493 HTPTTALAIRISKITKGSTKAENASSCSSNKANTNEIIAANSKILTKRSSNCSK 332
           ++P  A A+ I+++   STK   A + +    N+N+I AA S  +T+   NC+K
Sbjct: 111 NSPKIAAAVSITEVFMNSTKIAAAVNITEVFMNSNKIAAAVS--ITEVFMNCTK 162


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 500 KKRESAIEALKEYE-PEMGKVIRGDKSGVQKIRAK 601
           KK +S  ++ K  + P++ KVIRG K+G +K++ K
Sbjct: 2   KKVKSKAKSSKASKTPKLSKVIRGPKAGKEKVKKK 36


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 488  SMAGKKRESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPR 616
            ++  ++ ES  + L    PEMG  +  D  GV+   A E VPR
Sbjct: 1202 TVISREGESTPQVLLPDLPEMGSPLTMDTEGVETTEATEPVPR 1244


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 255 QIKRNQEKYGPNELPTE-EGKSIWQLVLEQFDDLLVK 362
           + KR+  K  P E+PTE   K  W+LV    +D+ V+
Sbjct: 390 EFKRDYFKMPPEEVPTEIVEKEFWRLVCSMDEDVQVE 426


>SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85)
          Length = 604

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 454 ITKGST-KAENASSCSSNKANTNEIIAANSKILTKRSSNCSKT 329
           +TKGST     +S+C   K++T ++  +++  LT+  S C  T
Sbjct: 132 LTKGSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTRNYSTCDLT 174


>SB_54251| Best HMM Match : rve (HMM E-Value=0.032)
          Length = 710

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 488 SMAGKKRESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPR 616
           ++  ++ ES  + L    PEMG  +  D  GV+   A E VPR
Sbjct: 500 TVISQEGESTPQVLLPDLPEMGSPLTMDTEGVETTEATEPVPR 542



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 488 SMAGKKRESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPR 616
           ++  ++ ES  + L    PEMG  +  D  GV+   A E VPR
Sbjct: 638 TVISQEGESTPQVLLPDLPEMGSPLTMDTEGVETTEATEPVPR 680


>SB_49099| Best HMM Match : rve (HMM E-Value=2e-08)
          Length = 553

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 509 ESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPR 616
           ES  + L    PEMG  +  D  GV+  +A E VPR
Sbjct: 478 ESTPQVLLPDLPEMGSPLTMDTEGVETTQATEPVPR 513


>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
          Length = 610

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 442 STKAENASSCSSNKANTNEIIAANSKILTKRSSNCSKTNCH 320
           +  A+NA++ ++  AN N   A N+      ++N + TN +
Sbjct: 464 ANNADNANNANATNANANNANATNANANNANANNANATNAN 504


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,562,480
Number of Sequences: 59808
Number of extensions: 373850
Number of successful extensions: 980
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)